BacMap

Definition	Psychromonas ingrahamii 37, complete genome.
Accession	NC_008709
Length	4,559,598

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The map label for this gene is ccmA [H]

Identifier: 119946645

GI number: 119946645

Start: 3722437

End: 3723075

Strand: Reverse

Name: ccmA [H]

Synonym: Ping_3024

Alternate gene names: 119946645

Gene position: 3723075-3722437 (Counterclockwise)

Preceding gene: 119946646

Following gene: 119946644

Centisome position: 81.65

GC content: 42.1

Gene sequence:

>639_bases
ATGCTGCACTGCAAAATGCTGACGGTTGTCCGTGAGGATCGTATTTTATTCAAAGATCTAAGCTTTACCATCAAACCGGG
TGAGATAGTGCAGATTGAAGGACCTAATGGCGTAGGTAAAACAAGCCTGTTTCGGTTGCTAATAGGTTTGTCCACGCCGT
ATTCAGGTGATATTTTTTGGCAAGGCTCCTCAATAGATAAAGATCGTGAATTTTTTTACCAGCAGCTTTTATATCTGGGT
CATAAATCAGGTATAAAACCTGAGTTAACCCCTTTAGAAAATTTACAGTTTTTTCAGACGTTACATGCTGCAGAGCAAGA
TATTGATTTGTGGTTTGTTTTAGCACAGGTTGGGTTGGCAGGTTATGAAGATGTGACAACGGCTCAGCTTTCTGCCGGAC
AACAACGCCGGGTGGCTTTAGCCCGATTATGGATTAATAAATGCCCGTTATGGGTATTAGATGAACCTTTTACCGCCATT
GATAAGTCAGGTATCGCCGTGTTGGAGTCTTTATTTATAAAGCATGCAGAAAAAGGGGGGATTGTTCTCCTCACTACACA
TCAGGATCTGAGGCTCGATGCTTCATTGTTACGGAAAATTCAATTAGGTGGGGTTGCTGCCGGTGAAGAATATGTTTAG

Upstream 100 bases:

>100_bases
TATGTTTATTACTTCATATAATCTTCTGTGTTAGCATTCAAATACCCCTTAATGATTGTCTTTGTACAAATATTATCCTT
AAATTTATTAGGTTAAGTTC

Downstream 100 bases:

>100_bases
CGCATTTTTTCAAGTCGTTGCTAAAGAGTTAAAAGGGGCTTTTCGTCACGGCAGTGATATTTTAAATCCGGTTTGGTTTT
TTATTATTGTTGTCACGCTC

Product: heme exporter protein CcmA

Products: NA

Alternate protein names: Heme exporter protein A [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MLHCKMLTVVREDRILFKDLSFTIKPGEIVQIEGPNGVGKTSLFRLLIGLSTPYSGDIFWQGSSIDKDREFFYQQLLYLG
HKSGIKPELTPLENLQFFQTLHAAEQDIDLWFVLAQVGLAGYEDVTTAQLSAGQQRRVALARLWINKCPLWVLDEPFTAI
DKSGIAVLESLFIKHAEKGGIVLLTTHQDLRLDASLLRKIQLGGVAAGEEYV

Sequences:

>Translated_212_residues
MLHCKMLTVVREDRILFKDLSFTIKPGEIVQIEGPNGVGKTSLFRLLIGLSTPYSGDIFWQGSSIDKDREFFYQQLLYLG
HKSGIKPELTPLENLQFFQTLHAAEQDIDLWFVLAQVGLAGYEDVTTAQLSAGQQRRVALARLWINKCPLWVLDEPFTAI
DKSGIAVLESLFIKHAEKGGIVLLTTHQDLRLDASLLRKIQLGGVAAGEEYV
>Mature_212_residues
MLHCKMLTVVREDRILFKDLSFTIKPGEIVQIEGPNGVGKTSLFRLLIGLSTPYSGDIFWQGSSIDKDREFFYQQLLYLG
HKSGIKPELTPLENLQFFQTLHAAEQDIDLWFVLAQVGLAGYEDVTTAQLSAGQQRRVALARLWINKCPLWVLDEPFTAI
DKSGIAVLESLFIKHAEKGGIVLLTTHQDLRLDASLLRKIQLGGVAAGEEYV

Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system [H]

COG id: COG4133

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=182, Percent_Identity=30.2197802197802, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI27436953, Length=184, Percent_Identity=28.804347826087, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI21536376, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI47078218, Length=190, Percent_Identity=31.0526315789474, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI45446740, Length=190, Percent_Identity=31.0526315789474, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI46592956, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI46592898, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI46592915, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI46592971, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI46592978, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI46592964, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9665248, Length=192, Percent_Identity=28.6458333333333, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI150417984, Length=188, Percent_Identity=28.7234042553192, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI215820660, Length=183, Percent_Identity=28.9617486338798, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI20143975, Length=183, Percent_Identity=28.9617486338798, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI153792144, Length=185, Percent_Identity=25.9459459459459, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI31657092, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=26.1083743842365, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=26.1083743842365, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI87082064, Length=202, Percent_Identity=51.980198019802, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI87081834, Length=196, Percent_Identity=29.5918367346939, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87081709, Length=151, Percent_Identity=32.4503311258278, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788165, Length=159, Percent_Identity=33.9622641509434, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788225, Length=182, Percent_Identity=30.2197802197802, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787029, Length=180, Percent_Identity=30, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787370, Length=146, Percent_Identity=36.3013698630137, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=159, Percent_Identity=33.9622641509434, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=188, Percent_Identity=31.9148936170213, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=29.5566502463054, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081782, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786563, Length=178, Percent_Identity=32.5842696629214, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789873, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1789672, Length=180, Percent_Identity=27.2222222222222, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790467, Length=152, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789032, Length=152, Percent_Identity=32.2368421052632, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=165, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786253, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789593, Length=197, Percent_Identity=27.9187817258883, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787164, Length=179, Percent_Identity=32.9608938547486, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789586, Length=192, Percent_Identity=28.125, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786872, Length=169, Percent_Identity=28.9940828402367, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=28.2178217821782, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1789991, Length=182, Percent_Identity=26.3736263736264, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=179, Percent_Identity=29.0502793296089, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=186, Percent_Identity=26.3440860215054, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920532, Length=177, Percent_Identity=31.638418079096, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24580930, Length=177, Percent_Identity=31.638418079096, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28574744, Length=185, Percent_Identity=28.6486486486486, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574533, Length=198, Percent_Identity=29.2929292929293, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24666092, Length=174, Percent_Identity=29.3103448275862, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076682, Length=185, Percent_Identity=27.5675675675676, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI161076684, Length=182, Percent_Identity=27.4725274725275, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581617, Length=182, Percent_Identity=27.4725274725275, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581615, Length=182, Percent_Identity=27.4725274725275, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR005895
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.41 [H]

Molecular weight: Translated: 23743; Mature: 23743

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHCKMLTVVREDRILFKDLSFTIKPGEIVQIEGPNGVGKTSLFRLLIGLSTPYSGDIFW
CCEEHEEHHHHHCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE
QGSSIDKDREFFYQQLLYLGHKSGIKPELTPLENLQFFQTLHAAEQDIDLWFVLAQVGLA
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
GYEDVTTAQLSAGQQRRVALARLWINKCPLWVLDEPFTAIDKSGIAVLESLFIKHAEKGG
CCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCHHHHCCCHHHHHHHHHHHHCCCCC
IVLLTTHQDLRLDASLLRKIQLGGVAAGEEYV
EEEEECCCCHHHCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLHCKMLTVVREDRILFKDLSFTIKPGEIVQIEGPNGVGKTSLFRLLIGLSTPYSGDIFW
CCEEHEEHHHHHCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE
QGSSIDKDREFFYQQLLYLGHKSGIKPELTPLENLQFFQTLHAAEQDIDLWFVLAQVGLA
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
GYEDVTTAQLSAGQQRRVALARLWINKCPLWVLDEPFTAIDKSGIAVLESLFIKHAEKGG
CCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCHHHHCCCHHHHHHHHHHHHCCCCC
IVLLTTHQDLRLDASLLRKIQLGGVAAGEEYV
EEEEECCCCHHHCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA