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The map label for this gene is deoD

Identifier: 119946488

GI number: 119946488

Start: 3544221

End: 3544931

Strand: Direct

Name: deoD

Synonym: Ping_2864

Alternate gene names: 119946488

Gene position: 3544221-3544931 (Clockwise)

Preceding gene: 119946487

Following gene: 119946489

Centisome position: 77.73

GC content: 43.6

Gene sequence:

>711_bases
ATGACAACCCCTCATATTAATGCAGTAGATGGCGCTTTTGCTGAAACTGTTCTGATGCCCGGTGACCCGTTACGCGCAAA
ATATATCGCAGAAAACTTTTTGAAAGACGCAGTGCAGGTAACAGATGTACGTAACATGCTTGGTTTTACCGGTACTTATA
AAGGCAAACGGGTTTCGGTAATGGGCAGTGGTATGGGTATCCCTTCCTGTTCAATTTATGCAACGGAATTATTCCGCGAA
TACGGCGTACAAAATATTATTCGTGTGGGCAGTTGCGGTGCAGTCAGTCGTGACATTAAGTTACGGGATGTGATCATTGG
AATGGGGGCATCGACGGATTCTAAAGCAAACCGTATTCGTTTTAAAGGTCATGACTTTGCCGCTATCGCAAGCTATGAAC
TGTTAGAAAAAGCAGTTAATGCTGCCAGAGCACTCGGCATTAAAGCGCGTGTGGGTAATATCTTTTCAGCCGATACCTTC
TACACTCCTGAGCCAGAAGTATTTGATACGCTTGAAAAATACAACATTCTTGGCGTCGAGATGGAAGCGGCAGGTTTGTA
TGGCGTCGCAGCTGAAGAAGGTAAAAATGCCCTGTGTATTTTAACCGTATCGGATCATATCCGCACAGGTGAAAAAACCA
CTTCAGATGAACGTCAAAGCAGCTTTAATGAAATGTTGATCATTGCTTTAGATTCAATTGTTGCCGAATAA

Upstream 100 bases:

>100_bases
ATTTTTAGCTGAATAAAGTTAAATATTATATAAAAACACAACTAATATGGATGACTAACAAGCGGCATCGTTAGTCACCC
ATAAAATGGAGAAATAATTT

Downstream 100 bases:

>100_bases
AGCTTGTAACGCTGCCCACGTGACGAAAAAGTGGCTTAGCACAACGATTTTAGGCATCTAAAAAAACCACATAATGACAA
CGTTCAGGGCATAAAAATAA

Product: purine nucleoside phosphorylase

Products: NA

Alternate protein names: PNP

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTTPHINAVDGAFAETVLMPGDPLRAKYIAENFLKDAVQVTDVRNMLGFTGTYKGKRVSVMGSGMGIPSCSIYATELFRE
YGVQNIIRVGSCGAVSRDIKLRDVIIGMGASTDSKANRIRFKGHDFAAIASYELLEKAVNAARALGIKARVGNIFSADTF
YTPEPEVFDTLEKYNILGVEMEAAGLYGVAAEEGKNALCILTVSDHIRTGEKTTSDERQSSFNEMLIIALDSIVAE

Sequences:

>Translated_236_residues
MTTPHINAVDGAFAETVLMPGDPLRAKYIAENFLKDAVQVTDVRNMLGFTGTYKGKRVSVMGSGMGIPSCSIYATELFRE
YGVQNIIRVGSCGAVSRDIKLRDVIIGMGASTDSKANRIRFKGHDFAAIASYELLEKAVNAARALGIKARVGNIFSADTF
YTPEPEVFDTLEKYNILGVEMEAAGLYGVAAEEGKNALCILTVSDHIRTGEKTTSDERQSSFNEMLIIALDSIVAE
>Mature_235_residues
TTPHINAVDGAFAETVLMPGDPLRAKYIAENFLKDAVQVTDVRNMLGFTGTYKGKRVSVMGSGMGIPSCSIYATELFREY
GVQNIIRVGSCGAVSRDIKLRDVIIGMGASTDSKANRIRFKGHDFAAIASYELLEKAVNAARALGIKARVGNIFSADTFY
TPEPEVFDTLEKYNILGVEMEAAGLYGVAAEEGKNALCILTVSDHIRTGEKTTSDERQSSFNEMLIIALDSIVAE

Specific function: Cleavage Of Guanosine Or Inosine To Respective Bases And Sugar-1-Phosphate Molecules. [C]

COG id: COG0813

COG function: function code F; Purine-nucleoside phosphorylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family

Homologues:

Organism=Escherichia coli, GI1790844, Length=234, Percent_Identity=70.0854700854701, Blast_Score=346, Evalue=1e-96,
Organism=Escherichia coli, GI1790265, Length=199, Percent_Identity=31.6582914572864, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOD_PSYIN (A1SYK4)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944168.1
- ProteinModelPortal:   A1SYK4
- SMR:   A1SYK4
- STRING:   A1SYK4
- GeneID:   4625646
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2864
- eggNOG:   COG0813
- HOGENOM:   HBG617197
- OMA:   SFETHAF
- PhylomeDB:   A1SYK4
- BioCyc:   PING357804:PING_2864-MONOMER
- HAMAP:   MF_01627
- InterPro:   IPR004402
- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- PANTHER:   PTHR21234
- TIGRFAMs:   TIGR00107

Pfam domain/function: PF01048 PNP_UDP_1

EC number: =2.4.2.1

Molecular weight: Translated: 25547; Mature: 25416

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPHINAVDGAFAETVLMPGDPLRAKYIAENFLKDAVQVTDVRNMLGFTGTYKGKRVSV
CCCCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
MGSGMGIPSCSIYATELFREYGVQNIIRVGSCGAVSRDIKLRDVIIGMGASTDSKANRIR
EECCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEE
FKGHDFAAIASYELLEKAVNAARALGIKARVGNIFSADTFYTPEPEVFDTLEKYNILGVE
ECCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCEEECCCCCCCCCHHHHHHHHCCEEEEE
MEAAGLYGVAAEEGKNALCILTVSDHIRTGEKTTSDERQSSFNEMLIIALDSIVAE
EECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEHHHHHCC
>Mature Secondary Structure 
TTPHINAVDGAFAETVLMPGDPLRAKYIAENFLKDAVQVTDVRNMLGFTGTYKGKRVSV
CCCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
MGSGMGIPSCSIYATELFREYGVQNIIRVGSCGAVSRDIKLRDVIIGMGASTDSKANRIR
EECCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEE
FKGHDFAAIASYELLEKAVNAARALGIKARVGNIFSADTFYTPEPEVFDTLEKYNILGVE
ECCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCEEECCCCCCCCCHHHHHHHHCCEEEEE
MEAAGLYGVAAEEGKNALCILTVSDHIRTGEKTTSDERQSSFNEMLIIALDSIVAE
EECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA