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The map label for this gene is deoB

Identifier: 119946487

GI number: 119946487

Start: 3542885

End: 3544132

Strand: Direct

Name: deoB

Synonym: Ping_2863

Alternate gene names: 119946487

Gene position: 3542885-3544132 (Clockwise)

Preceding gene: 119946486

Following gene: 119946488

Centisome position: 77.7

GC content: 46.07

Gene sequence:

>1248_bases
ATGAAACGTACCGTTATCTTATTACTTGATTCTTTTGGTGTTGGCGGCGCAGCTGATGCCGATAAATTTATTGGCTCATT
AGCTGACGGCAGTCAATATGATGATATGGGCTCAAATACCTTAGGGCATATAGCAGAGCAATGTGCAAAAGGTAACGCGA
ATGAGGGCCGCCATGGCCCGCTTACTATACCAAATTTAAATAAACTGGGTTTTGGACGCGCTTGTGCGGAAAGCTCATCC
ACTTTCCCCGCCGGATTAGACCCATTAGTTGAACCGATTGCGGCTTACGGTTACGCGAAAGAGATTTCCACGGCAAAAGA
TACCTCTAGCGGGCATTGGGAGATCACCGGTGTGCCAGTCTTATTTGACTGGGGCTATTTTGATAAAAAACAAAACAGCT
TCCCGCAGGAGCTTCTGGACGAATTGGTTGAGCGTGCTGACCTGCCCGGATATCTGGGGAATTGCCATGCATCGGGCACT
ACTATTTTGGAGGATCTCGGCGAAGAGCACCTTAAAACCGGTAAACCCATCTTTTATACCTCGGCAGACAGCGTTTTCCA
GATAGCCTGTCATGAAGAAACATTCGGGCTTGAAAGACTGTATAAACTTTGCGAACTGACACGTGAGTTAGTGAATAAAT
ACAATATTGGACGCGTTATCGCACGTCCGTTTAGCGGATCGGCAAGCAGCAATTTTATGCGCACCGGTAACCGCCATGAT
TATTCCGTGAAACCGCCCTCACCCACTCTGCTTGAGAGTATGAAAGAATCCGGTGGTCAGGTTGTCAGTATTGGAAAAAT
ATCAGATATTTTCGCTGAACAAGGCATTACTAAAGCGACCAAAGCAAACGGTTTGGAGGCCCTGTTTGACGCCAGCTTGA
ATGAACTTAAACAAGCTGGAGATCAAACTATTATCTTTACCAACTTTGTTAATTTTGATGCAGACTTTGGCCATCGCCGT
AATCTACCCGGTTACGCAGCCGCTTTAGAGTACTTCGATAAACGTTTACCAGAAATGCTCGCATTAATGACAGAAGATGA
TTTGCTGGTGTTAACGGCAGATCATGGCTGTGACCCGACATGGAAAGGAACGGATCATACTCGTGAGCATATTCCGGCTA
TTTTCTACGGTCACGCTGTTAAGCCTGGCCCAATCGGGTTACGGGAAACCTTTGCAGATATCGGTCAGTCAATTGCTGAT
TTTCACAAGTTACCTGCACTGGCGTACGGTAAAAGTATTTTTAGCTGA

Upstream 100 bases:

>100_bases
TCGATAGAACACATTTCCGATTTGGCGCATCGAGCTTACTCGGCGCTTTATTATCGGCACTTAATTTGGCTGATAAAGCC
ACTGAAACAGGAGGTTACTA

Downstream 100 bases:

>100_bases
ATAAAGTTAAATATTATATAAAAACACAACTAATATGGATGACTAACAAGCGGCATCGTTAGTCACCCATAAAATGGAGA
AATAATTTATGACAACCCCT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MKRTVILLLDSFGVGGAADADKFIGSLADGSQYDDMGSNTLGHIAEQCAKGNANEGRHGPLTIPNLNKLGFGRACAESSS
TFPAGLDPLVEPIAAYGYAKEISTAKDTSSGHWEITGVPVLFDWGYFDKKQNSFPQELLDELVERADLPGYLGNCHASGT
TILEDLGEEHLKTGKPIFYTSADSVFQIACHEETFGLERLYKLCELTRELVNKYNIGRVIARPFSGSASSNFMRTGNRHD
YSVKPPSPTLLESMKESGGQVVSIGKISDIFAEQGITKATKANGLEALFDASLNELKQAGDQTIIFTNFVNFDADFGHRR
NLPGYAAALEYFDKRLPEMLALMTEDDLLVLTADHGCDPTWKGTDHTREHIPAIFYGHAVKPGPIGLRETFADIGQSIAD
FHKLPALAYGKSIFS

Sequences:

>Translated_415_residues
MKRTVILLLDSFGVGGAADADKFIGSLADGSQYDDMGSNTLGHIAEQCAKGNANEGRHGPLTIPNLNKLGFGRACAESSS
TFPAGLDPLVEPIAAYGYAKEISTAKDTSSGHWEITGVPVLFDWGYFDKKQNSFPQELLDELVERADLPGYLGNCHASGT
TILEDLGEEHLKTGKPIFYTSADSVFQIACHEETFGLERLYKLCELTRELVNKYNIGRVIARPFSGSASSNFMRTGNRHD
YSVKPPSPTLLESMKESGGQVVSIGKISDIFAEQGITKATKANGLEALFDASLNELKQAGDQTIIFTNFVNFDADFGHRR
NLPGYAAALEYFDKRLPEMLALMTEDDLLVLTADHGCDPTWKGTDHTREHIPAIFYGHAVKPGPIGLRETFADIGQSIAD
FHKLPALAYGKSIFS
>Mature_415_residues
MKRTVILLLDSFGVGGAADADKFIGSLADGSQYDDMGSNTLGHIAEQCAKGNANEGRHGPLTIPNLNKLGFGRACAESSS
TFPAGLDPLVEPIAAYGYAKEISTAKDTSSGHWEITGVPVLFDWGYFDKKQNSFPQELLDELVERADLPGYLGNCHASGT
TILEDLGEEHLKTGKPIFYTSADSVFQIACHEETFGLERLYKLCELTRELVNKYNIGRVIARPFSGSASSNFMRTGNRHD
YSVKPPSPTLLESMKESGGQVVSIGKISDIFAEQGITKATKANGLEALFDASLNELKQAGDQTIIFTNFVNFDADFGHRR
NLPGYAAALEYFDKRLPEMLALMTEDDLLVLTADHGCDPTWKGTDHTREHIPAIFYGHAVKPGPIGLRETFADIGQSIAD
FHKLPALAYGKSIFS

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=417, Percent_Identity=63.0695443645084, Blast_Score=563, Evalue=1e-162,
Organism=Escherichia coli, GI1789781, Length=450, Percent_Identity=26.2222222222222, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_PSYIN (A1SYK3)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944167.1
- ProteinModelPortal:   A1SYK3
- SMR:   A1SYK3
- STRING:   A1SYK3
- GeneID:   4625645
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2863
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   A1SYK3
- ProtClustDB:   PRK05362
- BioCyc:   PING357804:PING_2863-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 45169; Mature: 45169

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTVILLLDSFGVGGAADADKFIGSLADGSQYDDMGSNTLGHIAEQCAKGNANEGRHGP
CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
LTIPNLNKLGFGRACAESSSTFPAGLDPLVEPIAAYGYAKEISTAKDTSSGHWEITGVPV
CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECEE
LFDWGYFDKKQNSFPQELLDELVERADLPGYLGNCHASGTTILEDLGEEHLKTGKPIFYT
EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCHHHHHCCCCEEEE
SADSVFQIACHEETFGLERLYKLCELTRELVNKYNIGRVIARPFSGSASSNFMRTGNRHD
CCCCEEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCHHHCCCCCC
YSVKPPSPTLLESMKESGGQVVSIGKISDIFAEQGITKATKANGLEALFDASLNELKQAG
CCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCC
DQTIIFTNFVNFDADFGHRRNLPGYAAALEYFDKRLPEMLALMTEDDLLVLTADHGCDPT
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
WKGTDHTREHIPAIFYGHAVKPGPIGLRETFADIGQSIADFHKLPALAYGKSIFS
CCCCCCHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MKRTVILLLDSFGVGGAADADKFIGSLADGSQYDDMGSNTLGHIAEQCAKGNANEGRHGP
CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
LTIPNLNKLGFGRACAESSSTFPAGLDPLVEPIAAYGYAKEISTAKDTSSGHWEITGVPV
CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECEE
LFDWGYFDKKQNSFPQELLDELVERADLPGYLGNCHASGTTILEDLGEEHLKTGKPIFYT
EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCHHHHHCCCCEEEE
SADSVFQIACHEETFGLERLYKLCELTRELVNKYNIGRVIARPFSGSASSNFMRTGNRHD
CCCCEEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCHHHCCCCCC
YSVKPPSPTLLESMKESGGQVVSIGKISDIFAEQGITKATKANGLEALFDASLNELKQAG
CCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCC
DQTIIFTNFVNFDADFGHRRNLPGYAAALEYFDKRLPEMLALMTEDDLLVLTADHGCDPT
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
WKGTDHTREHIPAIFYGHAVKPGPIGLRETFADIGQSIADFHKLPALAYGKSIFS
CCCCCCHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA