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The map label for this gene is yhdX [H]

Identifier: 119946444

GI number: 119946444

Start: 3466857

End: 3468074

Strand: Direct

Name: yhdX [H]

Synonym: Ping_2819

Alternate gene names: 119946444

Gene position: 3466857-3468074 (Clockwise)

Preceding gene: 119946443

Following gene: 119946445

Centisome position: 76.03

GC content: 41.54

Gene sequence:

>1218_bases
ATGCCCCCTTTTTCAAAGGCTTGTCTTGTTATGAATAAATCACAACTCCCCCCTGCTACCACCGGCGGCTTATTAAGTAG
CCCCAGAAATCGCGCTATTATTTTCCAATGTCTTGCGCTGCTCGCTGTGGTTGCCTGTGCATTTTACTTTACCAGTAATA
TGTTCGACAATATTGAAAAACGAGGCATTACTACCGGTTTTTCATTTTTAGGTGAAACAGCAGGATTTGGCGTAAGTCAG
TCACTGATAGCCTATGATGATACAACGTCTACTTTTTTAGATGTCTTTATTGTCGGCATACTAAACACTCTTTTAGTTGG
AGTGATCGGCATTATCTGTGCGTCTGTATTTGGATTATTAATTGGTATTGGCCGTTTATCCTCTAATTTTATAGTGGCTA
AGCTGTCGCTTGTTTATATTGAAACCTTCCGTAATATTCCTATTTTATTACAAATTTTATTTTGGTATAACATTGTGCTT
GCGGCCTTACCCGGCCCGCGCCAGAGTTTTAGCTATTTCGAATCTATTTTCCTAAACAATCGCGGATTATTACTCCCTGA
GCCTATTTTTCAGTCGGGCAGTATTTTTATACTGATTGCTTTTGTTATCGCCTGCACCGCGGTTATTTTTTTAACCCGAT
GGGCAAAAAAACGCCATGATCAAACAGGTGAAGAGTTCCCCTTAATTAAAGTCTCACTCGCTATCTTAATAGTATCTCCT
TTATTGGCTTATTTTGTGACCGGTCAGCCGATCACCGCTGAATATCCCGCACTGAAAGGCTTTAACTTTCAAGGTGGTTT
AGCTATTATTCCGGAGTTCTTAGCGCTTACTTTTGCACTCAGCATCTATACTGCCACTTACATTGCAGAAGCGGTGCGTG
CCGGTATTGAAGCTGTCGCATCGGGACAAAAAGAAGCAGCAGAATCTCTGGGCTTAAAAAAACATGTCATTTTACGCAAA
GTCGTTTTGCCGCAAGCACTGCGGGTCATTATTCCGCCGGTCATTAACCAGTATCTTAACCTGGTGAAAAACTCTTCCTT
GGCCACGGCCATTGGTTACCCTGAAATTGTGACGCTGTTTTCAGGAACAACTCTGAATCAAGTGGGTCAGGCTATTGAGA
TTATTATGATGACCATGGCGGTCTACCTCACCTTCAGTATTGTTATCTCTCTGCTGCTTAATTGGGTCAATGCAAAAATG
GAAATAAAAGGAAGATAA

Upstream 100 bases:

>100_bases
ACTCGCCTCTTAATATTGATCGCGGCCTTAATAAGTTATGGAATCAAGGCGGCTTAATGTACTCAATGCCAATCCGCTAA
ATACTATTTAGGGGGGCTTT

Downstream 100 bases:

>100_bases
TATGGCTGTTTATACGTTTAAAGAAGCTAAAGCAGCACCCTCAACCAGCAGAGGTGTTCTGTTCTGGTTACGAGAGAATC
TATTTTCTGATATTAAAAAT

Product: ABC polar amino acid transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPPFSKACLVMNKSQLPPATTGGLLSSPRNRAIIFQCLALLAVVACAFYFTSNMFDNIEKRGITTGFSFLGETAGFGVSQ
SLIAYDDTTSTFLDVFIVGILNTLLVGVIGIICASVFGLLIGIGRLSSNFIVAKLSLVYIETFRNIPILLQILFWYNIVL
AALPGPRQSFSYFESIFLNNRGLLLPEPIFQSGSIFILIAFVIACTAVIFLTRWAKKRHDQTGEEFPLIKVSLAILIVSP
LLAYFVTGQPITAEYPALKGFNFQGGLAIIPEFLALTFALSIYTATYIAEAVRAGIEAVASGQKEAAESLGLKKHVILRK
VVLPQALRVIIPPVINQYLNLVKNSSLATAIGYPEIVTLFSGTTLNQVGQAIEIIMMTMAVYLTFSIVISLLLNWVNAKM
EIKGR

Sequences:

>Translated_405_residues
MPPFSKACLVMNKSQLPPATTGGLLSSPRNRAIIFQCLALLAVVACAFYFTSNMFDNIEKRGITTGFSFLGETAGFGVSQ
SLIAYDDTTSTFLDVFIVGILNTLLVGVIGIICASVFGLLIGIGRLSSNFIVAKLSLVYIETFRNIPILLQILFWYNIVL
AALPGPRQSFSYFESIFLNNRGLLLPEPIFQSGSIFILIAFVIACTAVIFLTRWAKKRHDQTGEEFPLIKVSLAILIVSP
LLAYFVTGQPITAEYPALKGFNFQGGLAIIPEFLALTFALSIYTATYIAEAVRAGIEAVASGQKEAAESLGLKKHVILRK
VVLPQALRVIIPPVINQYLNLVKNSSLATAIGYPEIVTLFSGTTLNQVGQAIEIIMMTMAVYLTFSIVISLLLNWVNAKM
EIKGR
>Mature_404_residues
PPFSKACLVMNKSQLPPATTGGLLSSPRNRAIIFQCLALLAVVACAFYFTSNMFDNIEKRGITTGFSFLGETAGFGVSQS
LIAYDDTTSTFLDVFIVGILNTLLVGVIGIICASVFGLLIGIGRLSSNFIVAKLSLVYIETFRNIPILLQILFWYNIVLA
ALPGPRQSFSYFESIFLNNRGLLLPEPIFQSGSIFILIAFVIACTAVIFLTRWAKKRHDQTGEEFPLIKVSLAILIVSPL
LAYFVTGQPITAEYPALKGFNFQGGLAIIPEFLALTFALSIYTATYIAEAVRAGIEAVASGQKEAAESLGLKKHVILRKV
VLPQALRVIIPPVINQYLNLVKNSSLATAIGYPEIVTLFSGTTLNQVGQAIEIIMMTMAVYLTFSIVISLLLNWVNAKME
IKGR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=389, Percent_Identity=52.4421593830334, Blast_Score=367, Evalue=1e-103,
Organism=Escherichia coli, GI1788226, Length=129, Percent_Identity=37.2093023255814, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786874, Length=167, Percent_Identity=33.5329341317365, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787030, Length=133, Percent_Identity=32.3308270676692, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786873, Length=121, Percent_Identity=28.9256198347107, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082239, Length=111, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787087, Length=135, Percent_Identity=28.1481481481481, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44126; Mature: 43995

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPFSKACLVMNKSQLPPATTGGLLSSPRNRAIIFQCLALLAVVACAFYFTSNMFDNIEK
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGITTGFSFLGETAGFGVSQSLIAYDDTTSTFLDVFIVGILNTLLVGVIGIICASVFGLL
CCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGIGRLSSNFIVAKLSLVYIETFRNIPILLQILFWYNIVLAALPGPRQSFSYFESIFLNN
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
RGLLLPEPIFQSGSIFILIAFVIACTAVIFLTRWAKKRHDQTGEEFPLIKVSLAILIVSP
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LLAYFVTGQPITAEYPALKGFNFQGGLAIIPEFLALTFALSIYTATYIAEAVRAGIEAVA
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGQKEAAESLGLKKHVILRKVVLPQALRVIIPPVINQYLNLVKNSSLATAIGYPEIVTLF
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHH
SGTTLNQVGQAIEIIMMTMAVYLTFSIVISLLLNWVNAKMEIKGR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure 
PPFSKACLVMNKSQLPPATTGGLLSSPRNRAIIFQCLALLAVVACAFYFTSNMFDNIEK
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGITTGFSFLGETAGFGVSQSLIAYDDTTSTFLDVFIVGILNTLLVGVIGIICASVFGLL
CCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGIGRLSSNFIVAKLSLVYIETFRNIPILLQILFWYNIVLAALPGPRQSFSYFESIFLNN
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
RGLLLPEPIFQSGSIFILIAFVIACTAVIFLTRWAKKRHDQTGEEFPLIKVSLAILIVSP
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LLAYFVTGQPITAEYPALKGFNFQGGLAIIPEFLALTFALSIYTATYIAEAVRAGIEAVA
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGQKEAAESLGLKKHVILRKVVLPQALRVIIPPVINQYLNLVKNSSLATAIGYPEIVTLF
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHH
SGTTLNQVGQAIEIIMMTMAVYLTFSIVISLLLNWVNAKMEIKGR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]