Click here to switch to the map view.

The map label for this gene is yhdY [H]

Identifier: 119946445

GI number: 119946445

Start: 3468076

End: 3469155

Strand: Direct

Name: yhdY [H]

Synonym: Ping_2820

Alternate gene names: 119946445

Gene position: 3468076-3469155 (Clockwise)

Preceding gene: 119946444

Following gene: 119946446

Centisome position: 76.06

GC content: 40.65

Gene sequence:

>1080_bases
ATGGCTGTTTATACGTTTAAAGAAGCTAAAGCAGCACCCTCAACCAGCAGAGGTGTTCTGTTCTGGTTACGAGAGAATCT
ATTTTCTGATATTAAAAATAGTGTCTTAACCCTGCTGGGTATTTACATTGTTTATATCATGATCCCCCCGCTGCTTGACT
GGATGATTTTTGATGCAACCTGGAGTGGTACACAAAAGGAGATTGTTAACAGTGGTGCACGATGGATTTTTATCATCGAA
AAATTTGACCAGTTTATGTACGGGTTTTACCCGGTAGCAGAACACTGGCGTCCAAATTTAGTAGGCTTAATTTCTATTGC
CTTTTTATTATCGCTGAAGTTTATCCCTAATATTAAAGTTAAACTCGGGCTAATGTTAATCTACCCATTTGTCTGTTTTG
TACTGATCAGTGGCGGTTGGTTTGGGCTTGAAGAAGTACCCACTGAAAAATGGGGCGGTTTAATGCTGACTATACTGGTC
GCTGCCGTGGGAATTATTGCCTCATTTCCTATTGGTATTGTACTGGCCTTAGGACGCCAATCGGAGATGCCGATTCTAAA
AACATTATGTGTCGGATTTATTGAATTTATACGCGGTGTACCGCTTATTACCATTTTGTTTATGGCATCAGTTGTCTTAC
CGCTGTTTTTTAGTGACGGTATTGATTTTGATAAATTATTACGAGCATTAATAGGGATCACGCTATTTCAGTCCGCTTAT
ATCGCCGAGGTCATCCGAGGTGGTTTACAGGCCATTCCAAAAGGGCAATATGAAGCTGCTGAGTCATTAGGCTTAGGTTA
CTGGCAAGGCATGCTTTTAATCATTCTGCCGCAAGCATTAAAAATATCTATCCCCAATTTAGTGGGATCGTTTATCTCGC
TGTTTAAAGATACAACACTGGTGTTAATCATTGGGTTATTTGATGTGCTGGCCATGGTGACGCTAACCACCAGTGATGCC
CTCTGGTTAGGTTATGAAATCGAAGGTTATGTGTTTGTCACTATGATCTACTGGGTATGCTGCTTCTCCATGTCGCAATA
CTCAAAATCAGTCGAACGCAAATATCATACTGAGCATTAA

Upstream 100 bases:

>100_bases
ATTATTATGATGACCATGGCGGTCTACCTCACCTTCAGTATTGTTATCTCTCTGCTGCTTAATTGGGTCAATGCAAAAAT
GGAAATAAAAGGAAGATAAT

Downstream 100 bases:

>100_bases
GGAAATATCATGTCCGAACAAGAAGTTATGATCACGATGAAAAATGTTAATAAGTGGTATGGTGATTTCCATGTGCTTAA
AGATATCAATTTAAATATTA

Product: ABC polar amino acid transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MAVYTFKEAKAAPSTSRGVLFWLRENLFSDIKNSVLTLLGIYIVYIMIPPLLDWMIFDATWSGTQKEIVNSGARWIFIIE
KFDQFMYGFYPVAEHWRPNLVGLISIAFLLSLKFIPNIKVKLGLMLIYPFVCFVLISGGWFGLEEVPTEKWGGLMLTILV
AAVGIIASFPIGIVLALGRQSEMPILKTLCVGFIEFIRGVPLITILFMASVVLPLFFSDGIDFDKLLRALIGITLFQSAY
IAEVIRGGLQAIPKGQYEAAESLGLGYWQGMLLIILPQALKISIPNLVGSFISLFKDTTLVLIIGLFDVLAMVTLTTSDA
LWLGYEIEGYVFVTMIYWVCCFSMSQYSKSVERKYHTEH

Sequences:

>Translated_359_residues
MAVYTFKEAKAAPSTSRGVLFWLRENLFSDIKNSVLTLLGIYIVYIMIPPLLDWMIFDATWSGTQKEIVNSGARWIFIIE
KFDQFMYGFYPVAEHWRPNLVGLISIAFLLSLKFIPNIKVKLGLMLIYPFVCFVLISGGWFGLEEVPTEKWGGLMLTILV
AAVGIIASFPIGIVLALGRQSEMPILKTLCVGFIEFIRGVPLITILFMASVVLPLFFSDGIDFDKLLRALIGITLFQSAY
IAEVIRGGLQAIPKGQYEAAESLGLGYWQGMLLIILPQALKISIPNLVGSFISLFKDTTLVLIIGLFDVLAMVTLTTSDA
LWLGYEIEGYVFVTMIYWVCCFSMSQYSKSVERKYHTEH
>Mature_358_residues
AVYTFKEAKAAPSTSRGVLFWLRENLFSDIKNSVLTLLGIYIVYIMIPPLLDWMIFDATWSGTQKEIVNSGARWIFIIEK
FDQFMYGFYPVAEHWRPNLVGLISIAFLLSLKFIPNIKVKLGLMLIYPFVCFVLISGGWFGLEEVPTEKWGGLMLTILVA
AVGIIASFPIGIVLALGRQSEMPILKTLCVGFIEFIRGVPLITILFMASVVLPLFFSDGIDFDKLLRALIGITLFQSAYI
AEVIRGGLQAIPKGQYEAAESLGLGYWQGMLLIILPQALKISIPNLVGSFISLFKDTTLVLIIGLFDVLAMVTLTTSDAL
WLGYEIEGYVFVTMIYWVCCFSMSQYSKSVERKYHTEH

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=353, Percent_Identity=53.8243626062323, Blast_Score=380, Evalue=1e-107,
Organism=Escherichia coli, GI1788226, Length=189, Percent_Identity=37.037037037037, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=29.8076923076923, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=29.064039408867, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786874, Length=199, Percent_Identity=26.1306532663317, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994930, Length=124, Percent_Identity=32.258064516129, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787087, Length=181, Percent_Identity=27.0718232044199, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40288; Mature: 40156

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVYTFKEAKAAPSTSRGVLFWLRENLFSDIKNSVLTLLGIYIVYIMIPPLLDWMIFDAT
CCEEEECHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WSGTQKEIVNSGARWIFIIEKFDQFMYGFYPVAEHWRPNLVGLISIAFLLSLKFIPNIKV
CCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH
KLGLMLIYPFVCFVLISGGWFGLEEVPTEKWGGLMLTILVAAVGIIASFPIGIVLALGRQ
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEMPILKTLCVGFIEFIRGVPLITILFMASVVLPLFFSDGIDFDKLLRALIGITLFQSAY
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IAEVIRGGLQAIPKGQYEAAESLGLGYWQGMLLIILPQALKISIPNLVGSFISLFKDTTL
HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHH
VLIIGLFDVLAMVTLTTSDALWLGYEIEGYVFVTMIYWVCCFSMSQYSKSVERKYHTEH
HHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AVYTFKEAKAAPSTSRGVLFWLRENLFSDIKNSVLTLLGIYIVYIMIPPLLDWMIFDAT
CEEEECHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WSGTQKEIVNSGARWIFIIEKFDQFMYGFYPVAEHWRPNLVGLISIAFLLSLKFIPNIKV
CCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH
KLGLMLIYPFVCFVLISGGWFGLEEVPTEKWGGLMLTILVAAVGIIASFPIGIVLALGRQ
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEMPILKTLCVGFIEFIRGVPLITILFMASVVLPLFFSDGIDFDKLLRALIGITLFQSAY
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IAEVIRGGLQAIPKGQYEAAESLGLGYWQGMLLIILPQALKISIPNLVGSFISLFKDTTL
HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHH
VLIIGLFDVLAMVTLTTSDALWLGYEIEGYVFVTMIYWVCCFSMSQYSKSVERKYHTEH
HHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]