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The map label for this gene is 119946330

Identifier: 119946330

GI number: 119946330

Start: 3312858

End: 3313427

Strand: Reverse

Name: 119946330

Synonym: Ping_2701

Alternate gene names: NA

Gene position: 3313427-3312858 (Counterclockwise)

Preceding gene: 119946331

Following gene: 119946325

Centisome position: 72.67

GC content: 46.84

Gene sequence:

>570_bases
ATGAAACAGCCACTACAAATAACTTTTCGCGATATGCCGCACTCAGATGCAGTTGAAACTCATATCCGGGAGAAGGTCGC
CAAACTCGACGAATTTTATGATCATATTATGGCTTGCCATGTTGTGATTGAACAACCCCATGCGCATCATCAGCAGGGTA
AATTGTTCCGTGTATCTATCGATTTGACTCTGCCAGATGGTGAACTTTTAGTGAATCGTTCAGCACCGGAACATCACGCT
CACGAAGATGCCTATGTCGCTATACGTGATGCTTTTAAATCGATACGCAGACAGATGCAGGACTTTGTCAGAAAGCAGCG
CGGCAAAGTAAAAACACATGAGACCCCTGACCATGGCAAAATCTCTGTAGTTCGAGGTGACAAGGATTTCGGCCGGATAC
TGACGGCAGATGGAAGAGATATTTACTTTCACCGAAACAGTCTGGTCGATAGCGGGTTCGATGCCCTGGAAATAGGCAAT
GAGGTTCGATTTGTCGAAGAAGCCGGTGACCAAGGTCCCCAGGCCAGCAGCGTACGTCTGATTGGCAAACACCATATTGT
TGGTGAGTAA

Upstream 100 bases:

>100_bases
CAAGTTAAAAAAAATTAACTTAAATACAACGAATTAAAATTTTTCTGTTTCGCAATGTACTATATTTAAAATACGGGTTA
AACAGAAAAGGATTTGATTT

Downstream 100 bases:

>100_bases
TAAGCAAGCTTTGAGCTTCGGGTCTCGATCTTCGAGTTTTCTAGCTTTGAGCGGAATAGTTATCGGTAGGGTGCATTCTA
TACACCGCAAGCAGCGGCAA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: SSU Ribosomal Modulation Protein; Cold-Shock Protein; Cold-Shock Domain-Containing Protein; Sigma-54 Modulation Protein; Cold Shock Protein; Cold Shock Domain-Contain Protein

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKQPLQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTLPDGELLVNRSAPEHHA
HEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGKISVVRGDKDFGRILTADGRDIYFHRNSLVDSGFDALEIGN
EVRFVEEAGDQGPQASSVRLIGKHHIVGE

Sequences:

>Translated_189_residues
MKQPLQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTLPDGELLVNRSAPEHHA
HEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGKISVVRGDKDFGRILTADGRDIYFHRNSLVDSGFDALEIGN
EVRFVEEAGDQGPQASSVRLIGKHHIVGE
>Mature_189_residues
MKQPLQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSIDLTLPDGELLVNRSAPEHHA
HEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGKISVVRGDKDFGRILTADGRDIYFHRNSLVDSGFDALEIGN
EVRFVEEAGDQGPQASSVRLIGKHHIVGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21567; Mature: 21567

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPLQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSI
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DLTLPDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGK
EEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
ISVVRGDKDFGRILTADGRDIYFHRNSLVDSGFDALEIGNEVRFVEEAGDQGPQASSVRL
EEEEECCCCCCCEEECCCCEEEEECCCHHHCCCHHHHCCCCEEEHHHCCCCCCCCCCEEE
IGKHHIVGE
EECCCCCCC
>Mature Secondary Structure
MKQPLQITFRDMPHSDAVETHIREKVAKLDEFYDHIMACHVVIEQPHAHHQQGKLFRVSI
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DLTLPDGELLVNRSAPEHHAHEDAYVAIRDAFKSIRRQMQDFVRKQRGKVKTHETPDHGK
EEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
ISVVRGDKDFGRILTADGRDIYFHRNSLVDSGFDALEIGNEVRFVEEAGDQGPQASSVRL
EEEEECCCCCCCEEECCCCEEEEECCCHHHCCCHHHHCCCCEEEHHHCCCCCCCCCCEEE
IGKHHIVGE
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA