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The map label for this gene is yhdA [C]

Identifier: 119945857

GI number: 119945857

Start: 2672598

End: 2674469

Strand: Direct

Name: yhdA [C]

Synonym: Ping_2197

Alternate gene names: 119945857

Gene position: 2672598-2674469 (Clockwise)

Preceding gene: 119945856

Following gene: 119945858

Centisome position: 58.61

GC content: 37.82

Gene sequence:

>1872_bases
ATGAACAATTATAAAAAAACGATGTGGGTAAATTATTTATTTACATTTTTATCAGCAGTGGCGATCACTTTGGTTATAAA
AGTTGTTTTCAACCCGCTTCTTACTGAGCAACAAGAACAGCTTGTACAAGAGCTAAGTTTAGATAGCCCCCACCTGTTCG
TGAATGAATCAGAATTAAGCCGATTAGTTGAACACAATCAATTTTCCTATATTAAAATAACTAACCCTCAGTTGATGCTG
CCATTGGTCTATGAAAACAAACAAGCAACTGGAATTATAAGATTATTATTTTCTATCCCTTCAACTTTTGTTGTCTCCGA
AAATAGCAATCAGATAATTGAATTTAAGTCTAACAATGATGCTCTATTCGGACTATTGCCTAATATTCTTTTAGCCCTGT
ATAGCGCATTAATCATTGTGTCGACATTTATAGTCTTTAATTTTTCTCATATGTTTAAAAGTATTGAAATAGCCCTCATT
AACGAAATATCTGAGATAGAAGCACTACCTGGTCCCTATGCTAAGGTTTCTGCATTATTAAATGCTCAAAAAGAATCATT
CCAAAACAAATTAAATAAACAGGAAGAAAAAATCGCAGGATTGACGCAGCAGGCGACGACCGACAATCTCACTGGCGTTA
ATAACAGAAGTTCATTCCGCAAAACCTTAACCGAAATTTTAAGTGCTGAAAGCGGACAAAAACATGCCATCTTATCGATT
ATCAGAGCAAGTGAATTACTGGCAATAAACTCTCAGCAGGGCTTCATGCAGGGTGATTTATACCTTGAAAATCTCACTGA
AATTATCCGTAAAGTCACTTATCCCCATAAAAACATATCGATTTACCGCATCAGCGGTTCCGATTTTGCGTTAATCGCAC
TGGGAATGAGCGTCAGTGAAGCGCAACGAATTGCACAGGACTTAAAGGTTCTATTTGATCAGTATCAAGCTCAACATAAA
CTAGACAGTATTGCCTACAATGGCATATCATCATTCCAGTCTGGACAGAAGCCCGAACAAGTATTGGCACGAACTGATTT
AGCATTGGCAAAAGCACAAACAGAAGGCGTTAATAGCTGGGTATTTCAACAAAGTAATGATAATGATAATCAATTTGGAC
AGCAGCAGTGGCGTGTCGTGATCGAAAATATTATCGCCAAAAAAAGTGTCATATTATTACACCAACCTGTTCTAATACTT
CCAACTGATATGGTCGGCTATGAGGAAATTTTCACCCGCTTTGTATCCGATGATGGTCATGTCACACCCGCTGAGACTGT
TTTTGCAATGGCTCAACGTGTTGATATGATAATTAAACTTGAGCAATTCATTATTGGAGAAGTCATAAATCAATGCCGCA
GGAAAAGCGACCAGAAGAGTCGTTGGGGGATCAATATAAGCAGCTCTGCCATGCAAAACAGTAGCTTTATCGTGTGGTTA
GAAAGATTATTATTACGAGATCCGAAAGTAGCTGCATTACTCACTTTTGAAATGCAGGAAGAGTTACTTGATAGTAACCT
TGTTTCAAGTAAACGGGTTTTTGATATGCTCAGACGCACTGGGACACGATCTGCAATTAGTAACTTTGGTAAAGGGATTG
GTTCATTTGGCCTACTTAGGACGCTTAAACCTGATTTGGTTAAAATTGATTCAAGTTTGATCAATAATATTGAGCTTGAC
AGTGCGAATCAACAATTTATAAGGATGATTATCGATGTTGCACACCGAATGGATTGTACTATTATCGCCGAAGGTGTCGA
GCATTTAGCGCAAAAGCAGATATTAGAAACGATGCATATAGATGGTATTCAAGGCTTCTTAATCGCACGCCCTACTGAAC
TAAAGATCCCGGGCCAAGTGAACTTACTATAG

Upstream 100 bases:

>100_bases
CTCGTCACCAGCATCAGATTGAATCGAGTATGATGACACTATCCGGCAGTTTTAACCAGAATAATATATTAGCGTTCAGA
AAATCATGGAGTCAATTTGG

Downstream 100 bases:

>100_bases
TCAATTAACGTAAAAATCACACTAAATTGCCCGATGCTATGCAAGTCGGGCTTTGCATCTGAAAAATTATTTTTGTACAA
TGCCCCGCAAATCCTCTGCT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MNNYKKTMWVNYLFTFLSAVAITLVIKVVFNPLLTEQQEQLVQELSLDSPHLFVNESELSRLVEHNQFSYIKITNPQLML
PLVYENKQATGIIRLLFSIPSTFVVSENSNQIIEFKSNNDALFGLLPNILLALYSALIIVSTFIVFNFSHMFKSIEIALI
NEISEIEALPGPYAKVSALLNAQKESFQNKLNKQEEKIAGLTQQATTDNLTGVNNRSSFRKTLTEILSAESGQKHAILSI
IRASELLAINSQQGFMQGDLYLENLTEIIRKVTYPHKNISIYRISGSDFALIALGMSVSEAQRIAQDLKVLFDQYQAQHK
LDSIAYNGISSFQSGQKPEQVLARTDLALAKAQTEGVNSWVFQQSNDNDNQFGQQQWRVVIENIIAKKSVILLHQPVLIL
PTDMVGYEEIFTRFVSDDGHVTPAETVFAMAQRVDMIIKLEQFIIGEVINQCRRKSDQKSRWGINISSSAMQNSSFIVWL
ERLLLRDPKVAALLTFEMQEELLDSNLVSSKRVFDMLRRTGTRSAISNFGKGIGSFGLLRTLKPDLVKIDSSLINNIELD
SANQQFIRMIIDVAHRMDCTIIAEGVEHLAQKQILETMHIDGIQGFLIARPTELKIPGQVNLL

Sequences:

>Translated_623_residues
MNNYKKTMWVNYLFTFLSAVAITLVIKVVFNPLLTEQQEQLVQELSLDSPHLFVNESELSRLVEHNQFSYIKITNPQLML
PLVYENKQATGIIRLLFSIPSTFVVSENSNQIIEFKSNNDALFGLLPNILLALYSALIIVSTFIVFNFSHMFKSIEIALI
NEISEIEALPGPYAKVSALLNAQKESFQNKLNKQEEKIAGLTQQATTDNLTGVNNRSSFRKTLTEILSAESGQKHAILSI
IRASELLAINSQQGFMQGDLYLENLTEIIRKVTYPHKNISIYRISGSDFALIALGMSVSEAQRIAQDLKVLFDQYQAQHK
LDSIAYNGISSFQSGQKPEQVLARTDLALAKAQTEGVNSWVFQQSNDNDNQFGQQQWRVVIENIIAKKSVILLHQPVLIL
PTDMVGYEEIFTRFVSDDGHVTPAETVFAMAQRVDMIIKLEQFIIGEVINQCRRKSDQKSRWGINISSSAMQNSSFIVWL
ERLLLRDPKVAALLTFEMQEELLDSNLVSSKRVFDMLRRTGTRSAISNFGKGIGSFGLLRTLKPDLVKIDSSLINNIELD
SANQQFIRMIIDVAHRMDCTIIAEGVEHLAQKQILETMHIDGIQGFLIARPTELKIPGQVNLL
>Mature_623_residues
MNNYKKTMWVNYLFTFLSAVAITLVIKVVFNPLLTEQQEQLVQELSLDSPHLFVNESELSRLVEHNQFSYIKITNPQLML
PLVYENKQATGIIRLLFSIPSTFVVSENSNQIIEFKSNNDALFGLLPNILLALYSALIIVSTFIVFNFSHMFKSIEIALI
NEISEIEALPGPYAKVSALLNAQKESFQNKLNKQEEKIAGLTQQATTDNLTGVNNRSSFRKTLTEILSAESGQKHAILSI
IRASELLAINSQQGFMQGDLYLENLTEIIRKVTYPHKNISIYRISGSDFALIALGMSVSEAQRIAQDLKVLFDQYQAQHK
LDSIAYNGISSFQSGQKPEQVLARTDLALAKAQTEGVNSWVFQQSNDNDNQFGQQQWRVVIENIIAKKSVILLHQPVLIL
PTDMVGYEEIFTRFVSDDGHVTPAETVFAMAQRVDMIIKLEQFIIGEVINQCRRKSDQKSRWGINISSSAMQNSSFIVWL
ERLLLRDPKVAALLTFEMQEELLDSNLVSSKRVFDMLRRTGTRSAISNFGKGIGSFGLLRTLKPDLVKIDSSLINNIELD
SANQQFIRMIIDVAHRMDCTIIAEGVEHLAQKQILETMHIDGIQGFLIARPTELKIPGQVNLL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1789650, Length=439, Percent_Identity=22.5512528473804, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=433, Percent_Identity=24.4803695150115, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788849, Length=227, Percent_Identity=26.8722466960352, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081980, Length=234, Percent_Identity=28.6324786324786, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=20.9195402298851, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=21.3075060532688, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI226510982, Length=378, Percent_Identity=23.2804232804233, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=24.3697478991597, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=25, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786507, Length=227, Percent_Identity=20.704845814978, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70247; Mature: 70247

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNYKKTMWVNYLFTFLSAVAITLVIKVVFNPLLTEQQEQLVQELSLDSPHLFVNESELS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH
RLVEHNQFSYIKITNPQLMLPLVYENKQATGIIRLLFSIPSTFVVSENSNQIIEFKSNND
HHHHCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCC
ALFGLLPNILLALYSALIIVSTFIVFNFSHMFKSIEIALINEISEIEALPGPYAKVSALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NAQKESFQNKLNKQEEKIAGLTQQATTDNLTGVNNRSSFRKTLTEILSAESGQKHAILSI
HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
IRASELLAINSQQGFMQGDLYLENLTEIIRKVTYPHKNISIYRISGSDFALIALGMSVSE
HHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCHHH
AQRIAQDLKVLFDQYQAQHKLDSIAYNGISSFQSGQKPEQVLARTDLALAKAQTEGVNSW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH
VFQQSNDNDNQFGQQQWRVVIENIIAKKSVILLHQPVLILPTDMVGYEEIFTRFVSDDGH
EEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCHHHHHHHHHCCCCC
VTPAETVFAMAQRVDMIIKLEQFIIGEVINQCRRKSDQKSRWGINISSSAMQNSSFIVWL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHCCCHHHHHH
ERLLLRDPKVAALLTFEMQEELLDSNLVSSKRVFDMLRRTGTRSAISNFGKGIGSFGLLR
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
TLKPDLVKIDSSLINNIELDSANQQFIRMIIDVAHRMDCTIIAEGVEHLAQKQILETMHI
HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
DGIQGFLIARPTELKIPGQVNLL
CCCCEEEEECCCCEECCCCCCCC
>Mature Secondary Structure
MNNYKKTMWVNYLFTFLSAVAITLVIKVVFNPLLTEQQEQLVQELSLDSPHLFVNESELS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH
RLVEHNQFSYIKITNPQLMLPLVYENKQATGIIRLLFSIPSTFVVSENSNQIIEFKSNND
HHHHCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCC
ALFGLLPNILLALYSALIIVSTFIVFNFSHMFKSIEIALINEISEIEALPGPYAKVSALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NAQKESFQNKLNKQEEKIAGLTQQATTDNLTGVNNRSSFRKTLTEILSAESGQKHAILSI
HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
IRASELLAINSQQGFMQGDLYLENLTEIIRKVTYPHKNISIYRISGSDFALIALGMSVSE
HHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCHHH
AQRIAQDLKVLFDQYQAQHKLDSIAYNGISSFQSGQKPEQVLARTDLALAKAQTEGVNSW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH
VFQQSNDNDNQFGQQQWRVVIENIIAKKSVILLHQPVLILPTDMVGYEEIFTRFVSDDGH
EEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCHHHHHHHHHCCCCC
VTPAETVFAMAQRVDMIIKLEQFIIGEVINQCRRKSDQKSRWGINISSSAMQNSSFIVWL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHCCCHHHHHH
ERLLLRDPKVAALLTFEMQEELLDSNLVSSKRVFDMLRRTGTRSAISNFGKGIGSFGLLR
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
TLKPDLVKIDSSLINNIELDSANQQFIRMIIDVAHRMDCTIIAEGVEHLAQKQILETMHI
HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
DGIQGFLIARPTELKIPGQVNLL
CCCCEEEEECCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]