| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is sapF [H]
Identifier: 119945856
GI number: 119945856
Start: 2671534
End: 2672313
Strand: Direct
Name: sapF [H]
Synonym: Ping_2196
Alternate gene names: 119945856
Gene position: 2671534-2672313 (Clockwise)
Preceding gene: 119945855
Following gene: 119945857
Centisome position: 58.59
GC content: 35.9
Gene sequence:
>780_bases ATGACAGCTCTTCTTTGCATAGATAATTTATATAAACAATATAAAGGCAGTAAGTTTTTTTTGTCTTCGGGCTTTCGAAA TTCGGTAGGACCAATAAATTTCACCCTTGAGCAGGGTAAAATTTTGACTATTATTGGTGAAAATGGCTCAGGAAAAAGCA CGCTGGTACAGATGATCGCAGGCGTTATTCCAAGTACTTCCGGTGAGATTTATATTAAGGGTCATGCTCTTACGACTATG TCACGACAGAATAGATGTAAATCAGTTCGTATGATATTTCAAGATCCAAAAATTTCCCTCAACCCTAAAGTGACTATTGG GAAAATATTATCTGCCCCACTAGAGTTAAACACTGATTTAACGGCAGTACAACGCAAGCAACAGATCATCGCCACATTAG AGTTGGTTGGTTTATTACCGGATTATCTGCAATTCTATCCAAATATGTTATCAGCGGTTCAACAACATCAAGTTGCCATA GCACGGGCGATGGTCTTAAATCCTGATGTCGTTATCGCAGATTCAATTTTATCAACGTTAGATATCTCTCTCGGTTTCAA AATAGTTAATATTTTATTAGAGATACAAGAAAAAAAAGGGGTTAGTTTTATATTTATTTCGCATCATATGAACTTGGTAC GTCATATCAGCGATCAAGTTATTGTTATGCAACAGGGCAAGATCGTTGAGAACAATACAACAGATAATATATTCAATTCA CCTCAAAAGATGAGCACAAAAAATTTACTAAAAAGTCAACAGCCAGACTACAGGAAATGA
Upstream 100 bases:
>100_bases GCCCGCGAGCGCAAAGAACCTGCGTAAAAAATCCTGATACGTTAAATTATAAAGGGCATACGGTCCGTTGCCATTACCCA ACCTTAGATGAAAAAACAGC
Downstream 100 bases:
>100_bases TCGCATGATACTGAGTTGATTTATATGTTGTACGTTATATGTTATATTTTAAAATCAATGGCTTTTAATCAAAAATTTTA TTATATTGTGGCTTAGTTTC
Product: ABC transporter ATP-binding protein
Products: ADP; phosphate; peptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTALLCIDNLYKQYKGSKFFLSSGFRNSVGPINFTLEQGKILTIIGENGSGKSTLVQMIAGVIPSTSGEIYIKGHALTTM SRQNRCKSVRMIFQDPKISLNPKVTIGKILSAPLELNTDLTAVQRKQQIIATLELVGLLPDYLQFYPNMLSAVQQHQVAI ARAMVLNPDVVIADSILSTLDISLGFKIVNILLEIQEKKGVSFIFISHHMNLVRHISDQVIVMQQGKIVENNTTDNIFNS PQKMSTKNLLKSQQPDYRK
Sequences:
>Translated_259_residues MTALLCIDNLYKQYKGSKFFLSSGFRNSVGPINFTLEQGKILTIIGENGSGKSTLVQMIAGVIPSTSGEIYIKGHALTTM SRQNRCKSVRMIFQDPKISLNPKVTIGKILSAPLELNTDLTAVQRKQQIIATLELVGLLPDYLQFYPNMLSAVQQHQVAI ARAMVLNPDVVIADSILSTLDISLGFKIVNILLEIQEKKGVSFIFISHHMNLVRHISDQVIVMQQGKIVENNTTDNIFNS PQKMSTKNLLKSQQPDYRK >Mature_258_residues TALLCIDNLYKQYKGSKFFLSSGFRNSVGPINFTLEQGKILTIIGENGSGKSTLVQMIAGVIPSTSGEIYIKGHALTTMS RQNRCKSVRMIFQDPKISLNPKVTIGKILSAPLELNTDLTAVQRKQQIIATLELVGLLPDYLQFYPNMLSAVQQHQVAIA RAMVLNPDVVIADSILSTLDISLGFKIVNILLEIQEKKGVSFIFISHHMNLVRHISDQVIVMQQGKIVENNTTDNIFNSP QKMSTKNLLKSQQPDYRK
Specific function: Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides [H]
COG id: COG4167
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=260, Percent_Identity=25.7692307692308, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI9665248, Length=208, Percent_Identity=27.8846153846154, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI9955968, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9955966, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI45243524, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=203, Percent_Identity=25.615763546798, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=26.4957264957265, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=27.4336283185841, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI171184400, Length=223, Percent_Identity=21.52466367713, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787547, Length=247, Percent_Identity=46.5587044534413, Blast_Score=249, Evalue=9e-68, Organism=Escherichia coli, GI1789962, Length=258, Percent_Identity=37.984496124031, Blast_Score=195, Evalue=2e-51, Organism=Escherichia coli, GI145693107, Length=246, Percent_Identity=37.8048780487805, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI1787500, Length=249, Percent_Identity=35.3413654618474, Blast_Score=167, Evalue=8e-43, Organism=Escherichia coli, GI1787758, Length=251, Percent_Identity=33.0677290836653, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1788506, Length=223, Percent_Identity=36.322869955157, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI1789963, Length=261, Percent_Identity=32.9501915708812, Blast_Score=130, Evalue=6e-32, Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=31.8385650224215, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=29.6137339055794, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=28.3261802575107, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=30.9859154929577, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=30.6976744186047, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=27.1317829457364, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787759, Length=244, Percent_Identity=29.5081967213115, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789890, Length=232, Percent_Identity=28.0172413793103, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1788225, Length=262, Percent_Identity=30.5343511450382, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786872, Length=213, Percent_Identity=29.5774647887324, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=28.110599078341, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=29.535864978903, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=30.3921568627451, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=25.4901960784314, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=29.4930875576037, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789672, Length=251, Percent_Identity=25.8964143426295, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790467, Length=212, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787712, Length=246, Percent_Identity=28.0487804878049, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=28.695652173913, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=26.2222222222222, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787792, Length=261, Percent_Identity=26.4367816091954, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082267, Length=224, Percent_Identity=25.8928571428571, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787548, Length=269, Percent_Identity=25.6505576208178, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1788644, Length=215, Percent_Identity=26.9767441860465, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1788897, Length=219, Percent_Identity=30.5936073059361, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=27.5555555555556, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=225, Percent_Identity=24, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=28.1818181818182, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=28.6407766990291, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=222, Percent_Identity=27.9279279279279, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786654, Length=242, Percent_Identity=25.6198347107438, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790162, Length=231, Percent_Identity=28.1385281385281, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786563, Length=270, Percent_Identity=23.7037037037037, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=22.8310502283105, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787164, Length=218, Percent_Identity=23.394495412844, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789586, Length=216, Percent_Identity=30.5555555555556, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790525, Length=233, Percent_Identity=27.4678111587983, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=24, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=27.1889400921659, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=25.1046025104602, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=239, Percent_Identity=25.1046025104602, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786981, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788053, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786653, Length=230, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786803, Length=233, Percent_Identity=21.4592274678112, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=219, Percent_Identity=24.6575342465753, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=22.972972972973, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787113, Length=220, Percent_Identity=25.4545454545455, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=29.1079812206573, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193208177, Length=246, Percent_Identity=25.2032520325203, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17541710, Length=209, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=27.0742358078603, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI212646699, Length=215, Percent_Identity=27.4418604651163, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=28.2407407407407, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=28.2407407407407, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=28.2407407407407, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17569145, Length=206, Percent_Identity=26.2135922330097, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193202349, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17543740, Length=225, Percent_Identity=25.3333333333333, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115535101, Length=209, Percent_Identity=24.4019138755981, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565938, Length=236, Percent_Identity=24.1525423728814, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569143, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115534520, Length=232, Percent_Identity=22.4137931034483, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17567265, Length=217, Percent_Identity=24.4239631336406, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17551702, Length=227, Percent_Identity=24.6696035242291, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17551700, Length=227, Percent_Identity=24.6696035242291, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=229, Percent_Identity=24.4541484716157, Blast_Score=69, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6324985, Length=235, Percent_Identity=22.5531914893617, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322640, Length=241, Percent_Identity=24.896265560166, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641565, Length=214, Percent_Identity=26.6355140186916, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28573573, Length=229, Percent_Identity=24.4541484716157, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24653245, Length=215, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281363262, Length=215, Percent_Identity=25.5813953488372, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI28573571, Length=211, Percent_Identity=25.1184834123223, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI23397593, Length=232, Percent_Identity=26.7241379310345, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=209, Percent_Identity=24.4019138755981, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28833; Mature: 28702
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALLCIDNLYKQYKGSKFFLSSGFRNSVGPINFTLEQGKILTIIGENGSGKSTLVQMIA CEEEHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHH GVIPSTSGEIYIKGHALTTMSRQNRCKSVRMIFQDPKISLNPKVTIGKILSAPLELNTDL HHCCCCCCEEEEEECEEEHHHHHHHHHHHHHHEECCCCCCCCCEEHHHHHCCCCCCCCCH TAVQRKQQIIATLELVGLLPDYLQFYPNMLSAVQQHQVAIARAMVLNPDVVIADSILSTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH DISLGFKIVNILLEIQEKKGVSFIFISHHMNLVRHISDQVIVMQQGKIVENNTTDNIFNS HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHCC PQKMSTKNLLKSQQPDYRK CHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TALLCIDNLYKQYKGSKFFLSSGFRNSVGPINFTLEQGKILTIIGENGSGKSTLVQMIA EEEHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHH GVIPSTSGEIYIKGHALTTMSRQNRCKSVRMIFQDPKISLNPKVTIGKILSAPLELNTDL HHCCCCCCEEEEEECEEEHHHHHHHHHHHHHHEECCCCCCCCCEEHHHHHCCCCCCCCCH TAVQRKQQIIATLELVGLLPDYLQFYPNMLSAVQQHQVAIARAMVLNPDVVIADSILSTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH DISLGFKIVNILLEIQEKKGVSFIFISHHMNLVRHISDQVIVMQQGKIVENNTTDNIFNS HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHCC PQKMSTKNLLKSQQPDYRK CHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; peptides [Periplasm]; H2O [C]
Specific reaction: ATP + peptides [Periplasm] + H2O = ADP + phosphate + peptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]