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The map label for this gene is ygbT [H]

Identifier: 119945309

GI number: 119945309

Start: 1947183

End: 1948100

Strand: Direct

Name: ygbT [H]

Synonym: Ping_1592

Alternate gene names: 119945309

Gene position: 1947183-1948100 (Clockwise)

Preceding gene: 119945308

Following gene: 119945310

Centisome position: 42.71

GC content: 44.99

Gene sequence:

>918_bases
GTGACATTTATTCCCCTTAAACCCATCCCAATAAAAGCGCGAACGTCCATGATCTTTGTGGGAATGGGACAAATTGATGT
AAAAGACGGCGCATTTGTCGTTATTGATAAAAATGGCGAACGAATGCATATCACAGTCGGCACTATCGCATGCATTATGC
TTGAGCCGGGTACTCGGGTTAGTCATGCGGCCATTAAACTTGCCAGTATTTGCGGCACGTTGCTTATTTGGGTGGGTGAA
GCGGGCGTTAGGCTTTATTCTGCCGGGCAGCCTGGCGGTGCGCGCAGTGATAAATTACTTTATCAAGCCAAATTGGCATT
AGATGCTGAATTGCGTTTAAAGGTTGTTCGTAAGATGTTTGAACTCCGTTTTGGTGATGAAGCACCGCAACGCCGCAGTG
TTGAACAATTACGTGGAATCGAGGGGGCTAGGGTAAAAAAAACCTATCAGTTACTCGCTAAGCAGTATGGGGTTGAATGG
CATGGTCGACGCTATGATCGAAAAGACTGGGATAAAGGTGATACCATTAATCAATGTATCAGTGCTGCGACCGCTTGTTT
GTATGGCATTACCGAGGCGGCAATTTTAGCGGCAGGTTATGCCCCGGCGATCGGATTTTTACATACAGGAAAACCCTTGA
GTTTTGTCTATGATATTTCCGATATTATAAAATTTGAAACGGTTGTGCCAGTCGCCTTTCAGGTTGCAGCTAAAAAAACA
TACTCTCCAGATCGGGATGTACGCATTGCATGCAGGGAATCTTTTAGAAAAACCAAAATCTTAAAAAGGCTTATTCCTCT
GATAGAAGAAGTGTTAGGCGCTGGAGAGATAAAACCACCAGAGCCTTACGAAAATGCACAGCCACCCGCTATTCCTATGC
CTGAGACGATAGGTGATGACGGTCATCGTACTTCTTAA

Upstream 100 bases:

>100_bases
TTTTAAAGCATTAGTAAAAGGAGAGAGCGCACTCTATCGAAAATAACAAAGAGAATACCTTATCGAAGGGGTATTGCCAT
TAACATAAGGAGGTTGAAAG

Downstream 100 bases:

>100_bases
CAAGGAATTAATATGTCAATGGTCACAGTGGTAACAGAAGCTATTCCACCTCGTTTGCGGGGGAGATTAGCGGTTTGGCT
ATTAGAAGTTCGAGCGGGTG

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRVSHAAIKLASICGTLLIWVGE
AGVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMFELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEW
HGRRYDRKDWDKGDTINQCISAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKT
YSPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDDGHRTS

Sequences:

>Translated_305_residues
MTFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRVSHAAIKLASICGTLLIWVGE
AGVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMFELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEW
HGRRYDRKDWDKGDTINQCISAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKT
YSPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDDGHRTS
>Mature_304_residues
TFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRVSHAAIKLASICGTLLIWVGEA
GVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMFELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEWH
GRRYDRKDWDKGDTINQCISAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKTY
SPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDDGHRTS

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=305, Percent_Identity=75.4098360655738, Blast_Score=487, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33654; Mature: 33522

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRV
CCCCCCCCCCCCCCCCEEEEECCEEEECCCEEEEEECCCCEEEEEEHEEEEEEECCCCCH
SHAAIKLASICGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMF
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
ELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEWHGRRYDRKDWDKGDTINQCI
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
SAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKT
HHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHC
YSPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDD
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHRTS
CCCCC
>Mature Secondary Structure 
TFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRV
CCCCCCCCCCCCCCCEEEEECCEEEECCCEEEEEECCCCEEEEEEHEEEEEEECCCCCH
SHAAIKLASICGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMF
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
ELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEWHGRRYDRKDWDKGDTINQCI
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
SAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKT
HHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHC
YSPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDD
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHRTS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]