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The map label for this gene is iscR [H]

Identifier: 119945067

GI number: 119945067

Start: 1642580

End: 1643056

Strand: Direct

Name: iscR [H]

Synonym: Ping_1323

Alternate gene names: 119945067

Gene position: 1642580-1643056 (Clockwise)

Preceding gene: 119945066

Following gene: 119945068

Centisome position: 36.02

GC content: 42.14

Gene sequence:

>477_bases
ATGAAATTAACTTCAAAAGGGCGATATGCAGTAACCGCCATGATTGATGTCGCTATTAAAGAGCATACAGGCCCGGTGCC
ATTAGCTGACATTTCGGCGCGTCAGGGAATATCCCTTTCCTATCTTGAGCAGCTTTTCTCCAAATTACGCAAAAAAGAGT
TGGTGAGCAGTGTTCGCGGTCCAGGTGGTGGTTATAAACTGGGCAAAGAGCGTCATCAAATCTCTGTAGCAATGATTATT
GATGCTGTTAATGAGTCCGTAGACGTCAGAAAATGCGGCGGAAAAGGGGGCTGTGCAGAAGATGGGGTACAGTGTTTGAC
ACACTCTTTGTGGGCTCAGCTGAGTGATCGCATCAGTACTTTTTTAGATAATATTACCCTTGAAGAGCTAATGGTCTCTG
ATCATGTACAGCATATTTCTGGAATTCAAAATAATAAATTTAACCAAACTGAAAAGCTAAATGTTAAGTCACACTAA

Upstream 100 bases:

>100_bases
GACTATTTTTGTCAGGTATTTATAATAACACAATGAAGTCCACGGAAAGTGTTGCTATAGGTTGTTATATCTCATTTTCC
CACTATATAAGTGAAGCATT

Downstream 100 bases:

>100_bases
TACGTTTATATAGCACAGCGGAGATACAAATGAAATTACCAATTTACCTTGATTACTCTTCAACCACACCGGTTGACCCA
CGTGTTGCAGAAAAAATGAT

Product: transcriptional regulator, BadM/Rrf2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRGPGGGYKLGKERHQISVAMII
DAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRISTFLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH

Sequences:

>Translated_158_residues
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRGPGGGYKLGKERHQISVAMII
DAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRISTFLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH
>Mature_158_residues
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRGPGGGYKLGKERHQISVAMII
DAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRISTFLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH

Specific function: Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788880, Length=143, Percent_Identity=63.6363636363636, Blast_Score=171, Evalue=2e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010242
- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17319; Mature: 17319

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG
CCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PGGGYKLGKERHQISVAMIIDAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRIST
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG
CCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PGGGYKLGKERHQISVAMIIDAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRIST
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA