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The map label for this gene is nahR [H]

Identifier: 119944794

GI number: 119944794

Start: 1307481

End: 1308422

Strand: Reverse

Name: nahR [H]

Synonym: Ping_1036

Alternate gene names: 119944794

Gene position: 1308422-1307481 (Counterclockwise)

Preceding gene: 119944795

Following gene: 119944791

Centisome position: 28.7

GC content: 40.87

Gene sequence:

>942_bases
ATGGAACTGGAAGATGTTTACCGCAAAGACTTAAATCTCTTAATTGCATTAAAGGTATTAGTTGAAGAAGGCAGTGTCAG
TCATGCTGCTGTCAGGCTTAATTTAAGTCAATCAGCATTGAGTCGTATATTGGGGAGGTTAAGAGACCTGCTTGGCGATC
CGCTTTTTATTCGTCATGGCCAACATCTGCAGCCGACACAACGCGCTATCGAGTTAAACCTTGCACTTAATGATCCTCTG
CAATCATTACGGACCTTGTTATCACCCAATGATTTTGAAGCAATAAATTGCACGCAACATTTTAATATCGCCGCGACTGA
TTATGCACTGCAGACAATTATGCCCTATGCACTGCCCCGTATTTACAAAGAGGCACCCAATATATCGCTTGAATTTGTGC
CACTGAAACATAAACAGATGATCAGTCAGTTAACCAGTGAAGGGGTTGATATAGCTATCTGCCGTCCGGATTATTCAATT
GCCCCGTTACAACGGGATAAACTTGGCTTAGTCAGCGTATTTTGTATGTTATCAAAGTCTCATCCCCTTGCCGATAAAAC
ATTAACTCTGGAAAATTATCTTACTTATCCGCATGCTTTAATTGCTATTAGTGATGGCGTTAAAGCACTGCTTGATGCCA
CGCTAAGTGGGCATAAAAAGCAAAACACTGTTTTACGGGCATCTTATTTAAAAACGGCCTTAGCTATTATTGACAGTATG
CCGCTGCTTATTACCGTGCCTGCAGATCTCGCCTATTTAGTGGCAGAAAAATATGACTTGATTGTAAAACCCCTACCTTT
TGAATTTAAACCTTTTGAATATTCACTTATCTGGCATCCACGTTATGAATACTCCCCAGCACAAATTTGGCTTCGTCGTG
TATTAAAAGAGGAATGCAGTCAGTTAATTGAGCAGCGGATAGATGATATGGGATTGGGTTAG

Upstream 100 bases:

>100_bases
AGCGGCTCGACAGATCTTGGCATCAATAAATAAAAGGAATAGCGGTTGTGTTTAATCTTATCCATAATAACCCACTGTTA
TTGAAAGCGTGGATCAAAAT

Downstream 100 bases:

>100_bases
TGAGAAAAATTAATTAAAAAAAGCCTGCAGTAGCAGGCTTATTATACTATTTTATCGGTCAAGCAATATAATATTTACAG
CTTGATGACTATACGTCCGG

Product: transcriptional regulator of LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MELEDVYRKDLNLLIALKVLVEEGSVSHAAVRLNLSQSALSRILGRLRDLLGDPLFIRHGQHLQPTQRAIELNLALNDPL
QSLRTLLSPNDFEAINCTQHFNIAATDYALQTIMPYALPRIYKEAPNISLEFVPLKHKQMISQLTSEGVDIAICRPDYSI
APLQRDKLGLVSVFCMLSKSHPLADKTLTLENYLTYPHALIAISDGVKALLDATLSGHKKQNTVLRASYLKTALAIIDSM
PLLITVPADLAYLVAEKYDLIVKPLPFEFKPFEYSLIWHPRYEYSPAQIWLRRVLKEECSQLIEQRIDDMGLG

Sequences:

>Translated_313_residues
MELEDVYRKDLNLLIALKVLVEEGSVSHAAVRLNLSQSALSRILGRLRDLLGDPLFIRHGQHLQPTQRAIELNLALNDPL
QSLRTLLSPNDFEAINCTQHFNIAATDYALQTIMPYALPRIYKEAPNISLEFVPLKHKQMISQLTSEGVDIAICRPDYSI
APLQRDKLGLVSVFCMLSKSHPLADKTLTLENYLTYPHALIAISDGVKALLDATLSGHKKQNTVLRASYLKTALAIIDSM
PLLITVPADLAYLVAEKYDLIVKPLPFEFKPFEYSLIWHPRYEYSPAQIWLRRVLKEECSQLIEQRIDDMGLG
>Mature_313_residues
MELEDVYRKDLNLLIALKVLVEEGSVSHAAVRLNLSQSALSRILGRLRDLLGDPLFIRHGQHLQPTQRAIELNLALNDPL
QSLRTLLSPNDFEAINCTQHFNIAATDYALQTIMPYALPRIYKEAPNISLEFVPLKHKQMISQLTSEGVDIAICRPDYSI
APLQRDKLGLVSVFCMLSKSHPLADKTLTLENYLTYPHALIAISDGVKALLDATLSGHKKQNTVLRASYLKTALAIIDSM
PLLITVPADLAYLVAEKYDLIVKPLPFEFKPFEYSLIWHPRYEYSPAQIWLRRVLKEECSQLIEQRIDDMGLG

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=298, Percent_Identity=25.503355704698, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790147, Length=302, Percent_Identity=27.8145695364238, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35369; Mature: 35369

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEDVYRKDLNLLIALKVLVEEGSVSHAAVRLNLSQSALSRILGRLRDLLGDPLFIRHG
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEECC
QHLQPTQRAIELNLALNDPLQSLRTLLSPNDFEAINCTQHFNIAATDYALQTIMPYALPR
CCCCCCHHEEEEEEEECCHHHHHHHHHCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHH
IYKEAPNISLEFVPLKHKQMISQLTSEGVDIAICRPDYSIAPLQRDKLGLVSVFCMLSKS
HHHHCCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
HPLADKTLTLENYLTYPHALIAISDGVKALLDATLSGHKKQNTVLRASYLKTALAIIDSM
CCCCCCEEEHHHHHCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
PLLITVPADLAYLVAEKYDLIVKPLPFEFKPFEYSLIWHPRYEYSPAQIWLRRVLKEECS
CEEEECCHHHHHHHHHHHCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
QLIEQRIDDMGLG
HHHHHHHHHCCCC
>Mature Secondary Structure
MELEDVYRKDLNLLIALKVLVEEGSVSHAAVRLNLSQSALSRILGRLRDLLGDPLFIRHG
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEECC
QHLQPTQRAIELNLALNDPLQSLRTLLSPNDFEAINCTQHFNIAATDYALQTIMPYALPR
CCCCCCHHEEEEEEEECCHHHHHHHHHCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHH
IYKEAPNISLEFVPLKHKQMISQLTSEGVDIAICRPDYSIAPLQRDKLGLVSVFCMLSKS
HHHHCCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
HPLADKTLTLENYLTYPHALIAISDGVKALLDATLSGHKKQNTVLRASYLKTALAIIDSM
CCCCCCEEEHHHHHCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
PLLITVPADLAYLVAEKYDLIVKPLPFEFKPFEYSLIWHPRYEYSPAQIWLRRVLKEECS
CEEEECCHHHHHHHHHHHCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
QLIEQRIDDMGLG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]