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The map label for this gene is yddU [C]

Identifier: 119944362

GI number: 119944362

Start: 770386

End: 772050

Strand: Direct

Name: yddU [C]

Synonym: Ping_0589

Alternate gene names: 119944362

Gene position: 770386-772050 (Clockwise)

Preceding gene: 119944360

Following gene: 119944363

Centisome position: 16.9

GC content: 39.1

Gene sequence:

>1665_bases
ATGAATATGACACGATTTTTTGAATGGATTGAACAGTACCAACTTAAGATCAAAATATTGATGATTCCGCTGCTGGCCAT
TCTTATTGTTTCTGTCTACATACTTGTTTATATGACCGGCGGTATTAAATTCGTTTATTCACATTCGATGTATGTTCCTA
TCGTATTGTCAGGTTTGGTCTTTGGTGCCAGAGGCGGTATTTTAGTCGGTTTAATTAGCGGTTTGGTATTAGGACCCTTT
ATGCCAATCGATGTCGTCACCGGTGAACAGCAGAAGATGATTAACTGGCTCTATCGTACTGGATTCTTTACCTTGATAGC
ATTTATCAGTGGTATCGCATGGGATGGTGTAAAAACCCATATTATACAACTTAACTGGATTTTACAGCATAATGCATCTA
CCCGTCTGCCAAACCAATTGGCGTTGCTCAAGAAAATTCCCCTGATTGTCAAAGAAAAATCCTCACACTGTACTTTAATA
CTGGCTGTTATTTCCTTGGAAAATTCAATGGAGTTGAAAAATGCTTTTGGTTTAGGTGTTATTCAAGAAATTATCCAACA
ATTGGCCAAGCGTTTGAAAGATATTGAAATTAAAAATTATACATATCAAATAGAGACATCACAGTTAGTGATATTGGCAG
TCGATAGCGCTCAAAAAAATGAGGCCATTTATCACGAAATAGCAGGAATAAGCCGTGAGCCGTTTACTTTCAATGAAATT
TTTATTCATGTTGATATACGAATGGGCATTAGCGAATTCAGCCAACTTGTGCAAGCGCCCATCATCTATCTGCAAGAGGC
GGTACGAGCCTTGGCCGTGGCGCAAGAAAGAAAAATAGACAGAGTAACCTACAGTGCTGAAATCAAGCTTCATGATACTG
GCAATGTTGCTTTTTTAGGTGAGTTGAAAAAAGCGATAGCAGAAGGAGAGCTGTCGATGCATTATCAGCCGAAAATCGAT
ATTCCAACAGGGAATATCCATAGCGTAGAAGCGCTGATGAGATGGAATCATCCAGAAAAGGGGAATATACCTCCCTGTTT
ATTTATTCCACGCGCAGAGCAAAGTACATTGATTAATTTATTGACAGAGTTTGCTTTGGATGAGGCGATTAAGCAAATCG
TGCAGTGGAGGCAATACGATATAAATATACCCGTAGCCGTCAATATTTCGATCAACGATCTGTTACACCCGGGATTTTAT
AATCTTATCGCAAATCTTCTCGATAAGTACGGCGTAAGTGGAGAGTTTCTGGAATTGGAATTGACAGAAGGGGTAATGAT
AATTGATATGGAGAAGTCGAATGCTGAGTTGATGAAATTAAAAAAACTGAATATAAGTTTTTCTATCGATGATTTCGGCA
CAGGGTATTCATCATTACAATATTTGCATCTGCTTCCCATCTCTTTTATTAAAATAGATCAATCGTTTGTCCGCAGGTTA
CCGTCTGAAAGGCATGGTGTTTCCATTGTGGAAGCCACGGTGATGTTGGCCAATAAGATGGGAATAAAAGCCATCGCTGA
AGGCGTAGAAAACAAAGAAAGTTACGATTTTCTTGAAAATATCGGCTGTGATATAGCTCAGGGATATTTGATCTCCCGTC
CCTTGCCAGCAGATGATTTTACAAAATTCTACCTGCAATGCGGTGGTAGATATTTACCTGCGTGA

Upstream 100 bases:

>100_bases
CGCAGTGCCATTCAGATCCTTACTACTCTTACTCAAAAAAAAAGCTAATGCCGCAACCTAGGCAGTGTTTGCGGCGTTAG
CTTTTTCAAGGAGGCCAAAG

Downstream 100 bases:

>100_bases
ATTATAAAAAAGAATGGGCTAAAGTGGCAATAAAGCCAAATTATTAAAAGGCCCTGGGTGATCTTTTTTCTTTAGCAGTT
CAAATCGAATGACTCTTTTG

Product: cyclic-di-GMP regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MNMTRFFEWIEQYQLKIKILMIPLLAILIVSVYILVYMTGGIKFVYSHSMYVPIVLSGLVFGARGGILVGLISGLVLGPF
MPIDVVTGEQQKMINWLYRTGFFTLIAFISGIAWDGVKTHIIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLI
LAVISLENSMELKNAFGLGVIQEIIQQLAKRLKDIEIKNYTYQIETSQLVILAVDSAQKNEAIYHEIAGISREPFTFNEI
FIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHDTGNVAFLGELKKAIAEGELSMHYQPKID
IPTGNIHSVEALMRWNHPEKGNIPPCLFIPRAEQSTLINLLTEFALDEAIKQIVQWRQYDINIPVAVNISINDLLHPGFY
NLIANLLDKYGVSGEFLELELTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFIKIDQSFVRRL
PSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYLISRPLPADDFTKFYLQCGGRYLPA

Sequences:

>Translated_554_residues
MNMTRFFEWIEQYQLKIKILMIPLLAILIVSVYILVYMTGGIKFVYSHSMYVPIVLSGLVFGARGGILVGLISGLVLGPF
MPIDVVTGEQQKMINWLYRTGFFTLIAFISGIAWDGVKTHIIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLI
LAVISLENSMELKNAFGLGVIQEIIQQLAKRLKDIEIKNYTYQIETSQLVILAVDSAQKNEAIYHEIAGISREPFTFNEI
FIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHDTGNVAFLGELKKAIAEGELSMHYQPKID
IPTGNIHSVEALMRWNHPEKGNIPPCLFIPRAEQSTLINLLTEFALDEAIKQIVQWRQYDINIPVAVNISINDLLHPGFY
NLIANLLDKYGVSGEFLELELTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFIKIDQSFVRRL
PSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYLISRPLPADDFTKFYLQCGGRYLPA
>Mature_554_residues
MNMTRFFEWIEQYQLKIKILMIPLLAILIVSVYILVYMTGGIKFVYSHSMYVPIVLSGLVFGARGGILVGLISGLVLGPF
MPIDVVTGEQQKMINWLYRTGFFTLIAFISGIAWDGVKTHIIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLI
LAVISLENSMELKNAFGLGVIQEIIQQLAKRLKDIEIKNYTYQIETSQLVILAVDSAQKNEAIYHEIAGISREPFTFNEI
FIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHDTGNVAFLGELKKAIAEGELSMHYQPKID
IPTGNIHSVEALMRWNHPEKGNIPPCLFIPRAEQSTLINLLTEFALDEAIKQIVQWRQYDINIPVAVNISINDLLHPGFY
NLIANLLDKYGVSGEFLELELTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFIKIDQSFVRRL
PSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYLISRPLPADDFTKFYLQCGGRYLPA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=29.3023255813954, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=29.6208530805687, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=26.056338028169, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=36.4372469635627, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=34.9206349206349, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=30.1587301587302, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=33.1983805668016, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI87081980, Length=264, Percent_Identity=31.0606060606061, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=30.6122448979592, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787055, Length=397, Percent_Identity=25.6926952141058, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=28.2786885245902, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=431, Percent_Identity=23.6658932714617, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 62496; Mature: 62496

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMTRFFEWIEQYQLKIKILMIPLLAILIVSVYILVYMTGGIKFVYSHSMYVPIVLSGLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
FGARGGILVGLISGLVLGPFMPIDVVTGEQQKMINWLYRTGFFTLIAFISGIAWDGVKTH
HCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLILAVISLENSMELKNAFGLGV
EEEEEEEEECCCCCCCCHHHHHHHHCCEEEECCCCCEEEEEEEECCCCCHHHHHHCCHHH
IQEIIQQLAKRLKDIEIKNYTYQIETSQLVILAVDSAQKNEAIYHEIAGISREPFTFNEI
HHHHHHHHHHHHHCCEEECEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEE
FIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHDTGNVAFLG
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEHH
ELKKAIAEGELSMHYQPKIDIPTGNIHSVEALMRWNHPEKGNIPPCLFIPRAEQSTLINL
HHHHHHHCCCCEEEECCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LTEFALDEAIKQIVQWRQYDINIPVAVNISINDLLHPGFYNLIANLLDKYGVSGEFLELE
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
LTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFIKIDQSFVRRL
EECCEEEEEECCCCCHHEEEEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHCC
PSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYLISRPLPADDF
CCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCCHHCCEEECCCCCCHHH
TKFYLQCGGRYLPA
HHHHHHCCCCCCCC
>Mature Secondary Structure
MNMTRFFEWIEQYQLKIKILMIPLLAILIVSVYILVYMTGGIKFVYSHSMYVPIVLSGLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
FGARGGILVGLISGLVLGPFMPIDVVTGEQQKMINWLYRTGFFTLIAFISGIAWDGVKTH
HCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLILAVISLENSMELKNAFGLGV
EEEEEEEEECCCCCCCCHHHHHHHHCCEEEECCCCCEEEEEEEECCCCCHHHHHHCCHHH
IQEIIQQLAKRLKDIEIKNYTYQIETSQLVILAVDSAQKNEAIYHEIAGISREPFTFNEI
HHHHHHHHHHHHHCCEEECEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEE
FIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHDTGNVAFLG
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEHH
ELKKAIAEGELSMHYQPKIDIPTGNIHSVEALMRWNHPEKGNIPPCLFIPRAEQSTLINL
HHHHHHHCCCCEEEECCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LTEFALDEAIKQIVQWRQYDINIPVAVNISINDLLHPGFYNLIANLLDKYGVSGEFLELE
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
LTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFIKIDQSFVRRL
EECCEEEEEECCCCCHHEEEEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHCC
PSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYLISRPLPADDF
CCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCCCHHCCEEECCCCCCHHH
TKFYLQCGGRYLPA
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]