| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is relA [H]
Identifier: 119944303
GI number: 119944303
Start: 676697
End: 678910
Strand: Direct
Name: relA [H]
Synonym: Ping_0530
Alternate gene names: 119944303
Gene position: 676697-678910 (Clockwise)
Preceding gene: 119944302
Following gene: 119944309
Centisome position: 14.84
GC content: 41.73
Gene sequence:
>2214_bases ATGGTTTCAGTCAGAGATACACATTTTTATCAAACCGCGCAAAAAAACCCTAAAAAATGGGTCACTACGTTAGGCTTAAG TAGCTCGGATCAAAGCAAATTATTAGACAATTACGAAAAAATTATCGCTTTATGCCTGAACAGTGAGCAGCATACCCTGT TGGAGTTAGGGACTGAAATGGTTGAGATTTTGGTCACTTTAAACATGGACATGGACACCTTAAATGCCGCACTGATTTTT CCTCTGCTTGACCATCAAATTATCAGTCAGGAGCAAGTGAATGAATGGTGGTCTAAGCGTGTTGCCAAACTGGTTAAGGG TGCGACGGATATGGAAGGTATTCGGGCATTACAAAATCAGGGAGGGTCGAATAACAATGCCGCACAAGTGGATAACTTAC GTAATATGTTACTGGCAATGGTCGATGATGTCCGTGCCGTTGTTATTAAATTGGCTGAACGGATCTGTTATTTACGGCAG ATAAAAGGAGCAGATAAAGATAAAAGGCTGTTAGTCGCTAGTGAAATATCTTCGATTTATGCCCCGCTGGCAAATCGTTT AGGTATTGGACAGCTAAAATGGGAATTGGAAGACTTATCCTTTCGTTATTTAGAACCTGAAATTTATAAAAAAATAGCCA AACAGCTTGATGAAAAGCGTATCGATCGTGAACATTATATTGAAAATTTTGTTAACACCGTAAAAGATTCTCTGCAAGAG ATGAATGTTGACGGTACGGCCTATGGGCGTCCCAAACATATCTACAGTATTTACCGCAAAATGCAGAAAAAGAATTTACA GTTTGAAGATCTTTATGATGTACGTGCGGTGCGGGTTGTGGTTGAAAAACTACAGGATTGTTATGCGGCTTTAGGTGCCA TTCATACTCAGTGGCGCCATATTCCCAGTGAATTTGATGATTATATTGCCAATCCGAAAGCGAATGGCTACCAATCTATT CATACCGTCGTATTAGGGCCAGAAGGAAAAGCGGTTGAAGTGCAGATACGTACTCGAAAAATGCATGAAGATTCCGAATT GGGGGTTGCGGCTCACTGGAAATATAAAGAGGGCAGCGCTGGTGGAAAGGCCTCCAGCGGATATGAAGAGAAAATAGCCT GGCTACGTAAAATACTCGCCTGGCAGGAGGATATTGCCGACAGTGAGGACTTAGTTGATGAGGTGCGCAGTCAAGTTTTT GATGATCGTGTTTATGTTTTTACCCCCAAGGGTGAGGTGATAGATCTTCCCGCAGGAGCGACACCCCTTGATTTTGCCTA TTACATACACAGTCAGGTCGGACACCGCTGTATTGGTGCTAAAGTTGCCAACCATATTGTGCCTTTCACTTACCACTTAA AAACCGGTGATCAGGTTGAAATTCTCACTCAAAAAGAACCTAATCCAAGTCGAGATTGGCTCAATCCTAATTTAGGTTAT ATTAATGCCCCGCGCGCCAGAAATAAGGTTTCATCCTGGTTTAGAAAACAAGATCGTGATAAAAATGTCCAAGCGGGACG TGAGTTATTAGAAAATGAACTGGCTAAACTGAAACTGAAATTAAGTGATCTCCCTCCCGCAATAACACGTTTTAATGTGA GCTGTGTCGAGGATATTTTCGCCGGTGTGGGCAACGGTGATTTACGTATTAATCAGCTGCTAAACTTTTTAAATGATTAC CACCACCAACAAACATTAGCTGAGCAAGATCAGGCGGCGTTAGAATCCTTAGCGAAGCGCAGTAGTTCTTTTGTTGCCAA ACCCATTGGTGATAATATTACGATTCAGGGTGAAAGTAATTTATTGCACAGTATCGCCCGTTGTTGTCAGCCCATTCCTG GAGAGCCTATTGAGGGGTATATCACCCAAGGGCGAGGAATTTCAGTGCATCGTAAAGCCTGCGAACAATTGGCTGACTTG CGTGAGGCGAATCCAGAAAGGTTGGTTGAAGCATCTTGGGGGGATGCTAACTCGTCAGGTTATTCGTTAACACTTCGTCT GGAAGCCTTAGATCGGAGCGGCCTGCTAAGAGATGTATCGACGTTATTATCTAATGAAAAAGTAAATGTATTGGGCGTTA ACAGTATGACTAATGTTAAAACTCAGACGGCCATTATTGATCTTGATTTAGAAATACATACGAGTGATAACATTGCCAAA ATACAAAATAAAATCAAACAATTAAAAGATGTTTTACAGGTTAGACGTTTGTAG
Upstream 100 bases:
>100_bases TAAATTAGGTTTGTTGGACATGTTCCCGCAAACGGCTCATATGGAATCGATGGCACTGTTTACTGGTTAGATTTATTTTT ATTTTTTGGAGTTTCTTTTA
Downstream 100 bases:
>100_bases TGAATGAACTCCTCCTGTGTGCCAGGGGGAGTAATAGTATAATAGAATTTATTGGCAGAAATGTTTTTGCATAGCAGCTT GTTGCCCGCTAGATAAGGCG
Product: (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I [H]
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MVSVRDTHFYQTAQKNPKKWVTTLGLSSSDQSKLLDNYEKIIALCLNSEQHTLLELGTEMVEILVTLNMDMDTLNAALIF PLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQNQGGSNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQ IKGADKDKRLLVASEISSIYAPLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQLDEKRIDREHYIENFVNTVKDSLQE MNVDGTAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVVEKLQDCYAALGAIHTQWRHIPSEFDDYIANPKANGYQSI HTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYKEGSAGGKASSGYEEKIAWLRKILAWQEDIADSEDLVDEVRSQVF DDRVYVFTPKGEVIDLPAGATPLDFAYYIHSQVGHRCIGAKVANHIVPFTYHLKTGDQVEILTQKEPNPSRDWLNPNLGY INAPRARNKVSSWFRKQDRDKNVQAGRELLENELAKLKLKLSDLPPAITRFNVSCVEDIFAGVGNGDLRINQLLNFLNDY HHQQTLAEQDQAALESLAKRSSSFVAKPIGDNITIQGESNLLHSIARCCQPIPGEPIEGYITQGRGISVHRKACEQLADL REANPERLVEASWGDANSSGYSLTLRLEALDRSGLLRDVSTLLSNEKVNVLGVNSMTNVKTQTAIIDLDLEIHTSDNIAK IQNKIKQLKDVLQVRRL
Sequences:
>Translated_737_residues MVSVRDTHFYQTAQKNPKKWVTTLGLSSSDQSKLLDNYEKIIALCLNSEQHTLLELGTEMVEILVTLNMDMDTLNAALIF PLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQNQGGSNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQ IKGADKDKRLLVASEISSIYAPLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQLDEKRIDREHYIENFVNTVKDSLQE MNVDGTAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVVEKLQDCYAALGAIHTQWRHIPSEFDDYIANPKANGYQSI HTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYKEGSAGGKASSGYEEKIAWLRKILAWQEDIADSEDLVDEVRSQVF DDRVYVFTPKGEVIDLPAGATPLDFAYYIHSQVGHRCIGAKVANHIVPFTYHLKTGDQVEILTQKEPNPSRDWLNPNLGY INAPRARNKVSSWFRKQDRDKNVQAGRELLENELAKLKLKLSDLPPAITRFNVSCVEDIFAGVGNGDLRINQLLNFLNDY HHQQTLAEQDQAALESLAKRSSSFVAKPIGDNITIQGESNLLHSIARCCQPIPGEPIEGYITQGRGISVHRKACEQLADL REANPERLVEASWGDANSSGYSLTLRLEALDRSGLLRDVSTLLSNEKVNVLGVNSMTNVKTQTAIIDLDLEIHTSDNIAK IQNKIKQLKDVLQVRRL >Mature_737_residues MVSVRDTHFYQTAQKNPKKWVTTLGLSSSDQSKLLDNYEKIIALCLNSEQHTLLELGTEMVEILVTLNMDMDTLNAALIF PLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQNQGGSNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQ IKGADKDKRLLVASEISSIYAPLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQLDEKRIDREHYIENFVNTVKDSLQE MNVDGTAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVVEKLQDCYAALGAIHTQWRHIPSEFDDYIANPKANGYQSI HTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYKEGSAGGKASSGYEEKIAWLRKILAWQEDIADSEDLVDEVRSQVF DDRVYVFTPKGEVIDLPAGATPLDFAYYIHSQVGHRCIGAKVANHIVPFTYHLKTGDQVEILTQKEPNPSRDWLNPNLGY INAPRARNKVSSWFRKQDRDKNVQAGRELLENELAKLKLKLSDLPPAITRFNVSCVEDIFAGVGNGDLRINQLLNFLNDY HHQQTLAEQDQAALESLAKRSSSFVAKPIGDNITIQGESNLLHSIARCCQPIPGEPIEGYITQGRGISVHRKACEQLADL REANPERLVEASWGDANSSGYSLTLRLEALDRSGLLRDVSTLLSNEKVNVLGVNSMTNVKTQTAIIDLDLEIHTSDNIAK IQNKIKQLKDVLQVRRL
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which i
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1789147, Length=745, Percent_Identity=57.9865771812081, Blast_Score=901, Evalue=0.0, Organism=Escherichia coli, GI1790082, Length=680, Percent_Identity=32.3529411764706, Blast_Score=405, Evalue=1e-114,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83330; Mature: 83330
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVRDTHFYQTAQKNPKKWVTTLGLSSSDQSKLLDNYEKIIALCLNSEQHTLLELGTEM CCCCCCCHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VEILVTLNMDMDTLNAALIFPLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQNQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC GGSNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQIKGADKDKRLLVASEISSIY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH APLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQLDEKRIDREHYIENFVNTVKDSLQE HHHHHHCCCCHHEEEHHHCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MNVDGTAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVVEKLQDCYAALGAIHTQWRH CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPSEFDDYIANPKANGYQSIHTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYKEGSA CCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEHHCCCCCCCCEEEEEEECCCCC GGKASSGYEEKIAWLRKILAWQEDIADSEDLVDEVRSQVFDDRVYVFTPKGEVIDLPAGA CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCC TPLDFAYYIHSQVGHRCIGAKVANHIVPFTYHLKTGDQVEILTQKEPNPSRDWLNPNLGY CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC INAPRARNKVSSWFRKQDRDKNVQAGRELLENELAKLKLKLSDLPPAITRFNVSCVEDIF CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHH AGVGNGDLRINQLLNFLNDYHHQQTLAEQDQAALESLAKRSSSFVAKPIGDNITIQGESN HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEECCHH LLHSIARCCQPIPGEPIEGYITQGRGISVHRKACEQLADLREANPERLVEASWGDANSSG HHHHHHHHCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC YSLTLRLEALDRSGLLRDVSTLLSNEKVNVLGVNSMTNVKTQTAIIDLDLEIHTSDNIAK EEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHH IQNKIKQLKDVLQVRRL HHHHHHHHHHHHHHHCC >Mature Secondary Structure MVSVRDTHFYQTAQKNPKKWVTTLGLSSSDQSKLLDNYEKIIALCLNSEQHTLLELGTEM CCCCCCCHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VEILVTLNMDMDTLNAALIFPLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQNQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC GGSNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQIKGADKDKRLLVASEISSIY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH APLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQLDEKRIDREHYIENFVNTVKDSLQE HHHHHHCCCCHHEEEHHHCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MNVDGTAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVVEKLQDCYAALGAIHTQWRH CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPSEFDDYIANPKANGYQSIHTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYKEGSA CCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEHHCCCCCCCCEEEEEEECCCCC GGKASSGYEEKIAWLRKILAWQEDIADSEDLVDEVRSQVFDDRVYVFTPKGEVIDLPAGA CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCC TPLDFAYYIHSQVGHRCIGAKVANHIVPFTYHLKTGDQVEILTQKEPNPSRDWLNPNLGY CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC INAPRARNKVSSWFRKQDRDKNVQAGRELLENELAKLKLKLSDLPPAITRFNVSCVEDIF CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHH AGVGNGDLRINQLLNFLNDYHHQQTLAEQDQAALESLAKRSSSFVAKPIGDNITIQGESN HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEECCHH LLHSIARCCQPIPGEPIEGYITQGRGISVHRKACEQLADLREANPERLVEASWGDANSSG HHHHHHHHCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC YSLTLRLEALDRSGLLRDVSTLLSNEKVNVLGVNSMTNVKTQTAIIDLDLEIHTSDNIAK EEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHH IQNKIKQLKDVLQVRRL HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]