Click here to switch to the map view.

The map label for this gene is omp [H]

Identifier: 119944159

GI number: 119944159

Start: 485881

End: 486351

Strand: Reverse

Name: omp [H]

Synonym: Ping_0379

Alternate gene names: 119944159

Gene position: 486351-485881 (Counterclockwise)

Preceding gene: 119944168

Following gene: 119944156

Centisome position: 10.67

GC content: 51.17

Gene sequence:

>471_bases
ATGAAACAAGTGACGGTATTGTTAATAATTATTGCATTTTTACTGGTTGGTTGCACACAGCCGATAGGCTCCAAGGAGGG
AGCAGGAACCCTGCTTGGTGCGACCACCGGTGCCATACTCGGTTCCAATGTGGGTAAAGGAAAGGGCAATGTTGTAGCTA
TTGCTATTGGTACTCTGGCGGGTGCCCTGTTTGGTCAAGAAATAGGTCGCTCACTGGACCGAGCCGATCGCATTGCCATG
GGGCAGAATGCCCAGTACTCACTGGAACATACACGCAGCAATGAAACGACCCGTTGGAATAATCCTGATTCCGGTAACAG
CGGTTCAATCATGCCCACCCGAACCTATCAGCAGACAACGGGTCAATATTGCCGCGAGTATCGCCAGACAGTAGTGGTTG
GTGGCAAAAAGCAGGACGCATACGGCACGGCCTGCCGTCAGCCCGACGGCAGCTGGATAATTAATAATTAA

Upstream 100 bases:

>100_bases
AAAGTTTACCTTCACCGGCGGCGGAAAAGCCCCTTAGTTTTGTACTTTAGTCATAAAACATTTAAGCACTGCAATCAAAT
TAAAAAAGAGGAGAAAAACG

Downstream 100 bases:

>100_bases
CACTACTTATATTACGATTAAAGGAGTTCTATCCTATACCCGAATTACCTGAGGATACAGAAATCAGCAAGTAGTTTGGG
TATATAAAGCAAGCAGCTTG

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKQVTVLLIIIAFLLVGCTQPIGSKEGAGTLLGATTGAILGSNVGKGKGNVVAIAIGTLAGALFGQEIGRSLDRADRIAM
GQNAQYSLEHTRSNETTRWNNPDSGNSGSIMPTRTYQQTTGQYCREYRQTVVVGGKKQDAYGTACRQPDGSWIINN

Sequences:

>Translated_156_residues
MKQVTVLLIIIAFLLVGCTQPIGSKEGAGTLLGATTGAILGSNVGKGKGNVVAIAIGTLAGALFGQEIGRSLDRADRIAM
GQNAQYSLEHTRSNETTRWNNPDSGNSGSIMPTRTYQQTTGQYCREYRQTVVVGGKKQDAYGTACRQPDGSWIINN
>Mature_156_residues
MKQVTVLLIIIAFLLVGCTQPIGSKEGAGTLLGATTGAILGSNVGKGKGNVVAIAIGTLAGALFGQEIGRSLDRADRIAM
GQNAQYSLEHTRSNETTRWNNPDSGNSGSIMPTRTYQQTTGQYCREYRQTVVVGGKKQDAYGTACRQPDGSWIINN

Specific function: Unknown

COG id: COG4520

COG function: function code M; Surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rickettsiale 17 kDa surface antigen family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816
- InterPro:   IPR016364 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 16536; Mature: 16536

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVTVLLIIIAFLLVGCTQPIGSKEGAGTLLGATTGAILGSNVGKGKGNVVAIAIGTLA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEEHHHHH
GALFGQEIGRSLDRADRIAMGQNAQYSLEHTRSNETTRWNNPDSGNSGSIMPTRTYQQTT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
GQYCREYRQTVVVGGKKQDAYGTACRQPDGSWIINN
HHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKQVTVLLIIIAFLLVGCTQPIGSKEGAGTLLGATTGAILGSNVGKGKGNVVAIAIGTLA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEEHHHHH
GALFGQEIGRSLDRADRIAMGQNAQYSLEHTRSNETTRWNNPDSGNSGSIMPTRTYQQTT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
GQYCREYRQTVVVGGKKQDAYGTACRQPDGSWIINN
HHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA