| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is menH [H]
Identifier: 119944135
GI number: 119944135
Start: 453637
End: 454434
Strand: Reverse
Name: menH [H]
Synonym: Ping_0351
Alternate gene names: 119944135
Gene position: 454434-453637 (Counterclockwise)
Preceding gene: 119944136
Following gene: 119944134
Centisome position: 9.97
GC content: 38.6
Gene sequence:
>798_bases ATGCCACTTTTTAGCCAAACGCAGGGGTCGCCTCAATCTCCTGCTTTAGTTTTTTTGCACGGTTTTTTAGGTAGTCATCA GGATTGGTGTGAAACTATCAAGCAGCTGAAAAAATCTTTTTATTGTATCTCTATCGATCTGCCCGGGCATGGAGATTCCG CCTCAGTAACAATACCTAAAGATAAAGGCTTTGAGACAACACATCGGTTGATTAAAAATGTATTAAACGACTTAAAAATC AAAGAATATATTCTTATTGGTTATTCCTTAGGTGGCCGTATTGCGCTTGATTACGCACGCACACAACAGGATCAGCACTT AAAAGCCTTGGTCTTAGAATCTTGCCATACCGGTTATCAAACTCAGGATGAAAAAGATAAACGTTTTGCACATGATCTTA GTTGGGCGAAACGCTTTGCCACACAAAGTATTAGACAAAGTTTAAATCAATGGTATGAACAGGATATTTTCAACGATCTT TCCTGCGAACAAAAAAATAATCTGTTTAATAAGCGCAGTCGTAATTACGGTGTCTGTTTAGCAAATATGCTGCTGGCAAC CAGTCTCGCTGAGCAAACCGATGCATTGCCTTTTTTACAAAAAAATACTGCACAAGCAAAACCCTTATCCATTTATTACT GTTTTGGCGAAAAAGATAATAAATTTAAAACCCTAGGCCGCGCATTAGCCAAGCTTAAAAATATCCAACCAACTGAATTT GCCGGGGCAGGTCATAATATTCACCAACAGAGTCCTGTGCAATATGCGCGCTTTATTAAGCAGCATTTTAGTCAATAA
Upstream 100 bases:
>100_bases TATCAAAAATCATTACAGAATCGTCTTTCTTTAATTGAGATCTGTGTCAAAAACGACCAAACTTACAACCATCTTGAATA CATCAAAGAGCAGATAAAGT
Downstream 100 bases:
>100_bases TTTTTAGATAATAATTAAGAGAAAAATATGCCTGAAAAAGAGGGTTATGCACCCATTGCATGGAAAAAAAGCGCGTTAAA CTTCACTGACATTCTCTACC
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: SHCHC synthase [H]
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MPLFSQTQGSPQSPALVFLHGFLGSHQDWCETIKQLKKSFYCISIDLPGHGDSASVTIPKDKGFETTHRLIKNVLNDLKI KEYILIGYSLGGRIALDYARTQQDQHLKALVLESCHTGYQTQDEKDKRFAHDLSWAKRFATQSIRQSLNQWYEQDIFNDL SCEQKNNLFNKRSRNYGVCLANMLLATSLAEQTDALPFLQKNTAQAKPLSIYYCFGEKDNKFKTLGRALAKLKNIQPTEF AGAGHNIHQQSPVQYARFIKQHFSQ
Sequences:
>Translated_265_residues MPLFSQTQGSPQSPALVFLHGFLGSHQDWCETIKQLKKSFYCISIDLPGHGDSASVTIPKDKGFETTHRLIKNVLNDLKI KEYILIGYSLGGRIALDYARTQQDQHLKALVLESCHTGYQTQDEKDKRFAHDLSWAKRFATQSIRQSLNQWYEQDIFNDL SCEQKNNLFNKRSRNYGVCLANMLLATSLAEQTDALPFLQKNTAQAKPLSIYYCFGEKDNKFKTLGRALAKLKNIQPTEF AGAGHNIHQQSPVQYARFIKQHFSQ >Mature_264_residues PLFSQTQGSPQSPALVFLHGFLGSHQDWCETIKQLKKSFYCISIDLPGHGDSASVTIPKDKGFETTHRLIKNVLNDLKIK EYILIGYSLGGRIALDYARTQQDQHLKALVLESCHTGYQTQDEKDKRFAHDLSWAKRFATQSIRQSLNQWYEQDIFNDLS CEQKNNLFNKRSRNYGVCLANMLLATSLAEQTDALPFLQKNTAQAKPLSIYYCFGEKDNKFKTLGRALAKLKNIQPTEFA GAGHNIHQQSPVQYARFIKQHFSQ
Specific function: Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). Is also
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. MenH family [H]
Homologues:
Organism=Escherichia coli, GI1788598, Length=253, Percent_Identity=36.7588932806324, Blast_Score=157, Evalue=9e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR022485 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =4.2.99.20 [H]
Molecular weight: Translated: 30236; Mature: 30104
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFSQTQGSPQSPALVFLHGFLGSHQDWCETIKQLKKSFYCISIDLPGHGDSASVTIPK CCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCEEECCC DKGFETTHRLIKNVLNDLKIKEYILIGYSLGGRIALDYARTQQDQHLKALVLESCHTGYQ CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCC TQDEKDKRFAHDLSWAKRFATQSIRQSLNQWYEQDIFNDLSCEQKNNLFNKRSRNYGVCL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH ANMLLATSLAEQTDALPFLQKNTAQAKPLSIYYCFGEKDNKFKTLGRALAKLKNIQPTEF HHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC AGAGHNIHQQSPVQYARFIKQHFSQ CCCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure PLFSQTQGSPQSPALVFLHGFLGSHQDWCETIKQLKKSFYCISIDLPGHGDSASVTIPK CCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCEEECCC DKGFETTHRLIKNVLNDLKIKEYILIGYSLGGRIALDYARTQQDQHLKALVLESCHTGYQ CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCC TQDEKDKRFAHDLSWAKRFATQSIRQSLNQWYEQDIFNDLSCEQKNNLFNKRSRNYGVCL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH ANMLLATSLAEQTDALPFLQKNTAQAKPLSIYYCFGEKDNKFKTLGRALAKLKNIQPTEF HHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC AGAGHNIHQQSPVQYARFIKQHFSQ CCCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA