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The map label for this gene is ycdM [C]

Identifier: 119870458

GI number: 119870458

Start: 4658862

End: 4659728

Strand: Direct

Name: ycdM [C]

Synonym: Mkms_4429

Alternate gene names: 119870458

Gene position: 4658862-4659728 (Clockwise)

Preceding gene: 119870449

Following gene: 119870460

Centisome position: 81.2

GC content: 65.74

Gene sequence:

>867_bases
GTGCGGTTCACCTATGCCGAGGCGATGACGGACCCGACGTACTACATTCCGTTGGCCAAGGCCGCCGAGGCCGCCGGCTA
TGACGCGATGACGATTCCCGACAGCGTCGCCTACCCGTTCGAATCCGAGTCGAAGTACCCCTACACCCCCAACGGCAGCC
GCGAGTTCCTCGACGGGAAGGCGTTCATCGAGTCGTTCGTGCTCGCGAGCGCGCTGTGCGCGGTCACCACCACGCTGCGG
TTCAACTTCTTCGTGCTCAAGCTGCCGATCCGTCCGCCCGCCCTGGTGGCCAAACAGGCCGGGTCGTTGGCGGCACTGTT
CGACAACCGCCTCGGCCTCGGCGTCGGCACCAGCCCGTGGCCCGAGGACTACGAGTTGATGAACGTGCCGTTCGCCAAGC
GGGGCAAGCGAATGGACGAGTGCATCGAGATCATCCGGGGTCTCACCACCGGTGAGTACTTCGAGTTCCACGGCGAGTTC
TACGACATCCCCAAGACGAAGATGACACCCGCCCCGACGAAGCCGGTGCCGATCCTGGTCGGCGGCCACGCCGACGTCGC
ACTCAAGCGCGCCGCGCGCTGCGACGGCTGGATGCACGGCGGCGGCGACCCGGAGGAACTCGACGGCCTGATCGCCAAGC
TCAACAGGTTCCGCGAGGAGCAGGGCCAGAGCGGACCGTTCGAGATCCACGTCATCTCGGTCGACGCGTTCACCCTCGAC
GGCATCAAACGCCTGGAGGACAAGGGCGTCACCGACGTGATCGTCGGGTTCCGCATCCCCTACATCACCGGGGCCGACAC
CGAACCGCTCGCCGACAAGATCCGCAACCTCGAGTGGTTCGCGGAGAACGTGATCGGCAAGCTGTGA

Upstream 100 bases:

>100_bases
TTCGCGACGCTCACGGCCGTGGCGTTCCCGACCCGCCAATCTTCAAACATCGGACTAGAACACGTTCTAGTATTCGGGCA
TCCCACAACCAGGAGGCACC

Downstream 100 bases:

>100_bases
CGGCGTCGCGTCACCCGCGAAGGGTGGTGTGCGGGCTCTGCCCGTAGGCCTCGCGGTACATCACCGCGAACCTGCCGGTG
TGGGCGAACCCCCACTGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MRFTYAEAMTDPTYYIPLAKAAEAAGYDAMTIPDSVAYPFESESKYPYTPNGSREFLDGKAFIESFVLASALCAVTTTLR
FNFFVLKLPIRPPALVAKQAGSLAALFDNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIRGLTTGEYFEFHGEF
YDIPKTKMTPAPTKPVPILVGGHADVALKRAARCDGWMHGGGDPEELDGLIAKLNRFREEQGQSGPFEIHVISVDAFTLD
GIKRLEDKGVTDVIVGFRIPYITGADTEPLADKIRNLEWFAENVIGKL

Sequences:

>Translated_288_residues
MRFTYAEAMTDPTYYIPLAKAAEAAGYDAMTIPDSVAYPFESESKYPYTPNGSREFLDGKAFIESFVLASALCAVTTTLR
FNFFVLKLPIRPPALVAKQAGSLAALFDNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIRGLTTGEYFEFHGEF
YDIPKTKMTPAPTKPVPILVGGHADVALKRAARCDGWMHGGGDPEELDGLIAKLNRFREEQGQSGPFEIHVISVDAFTLD
GIKRLEDKGVTDVIVGFRIPYITGADTEPLADKIRNLEWFAENVIGKL
>Mature_288_residues
MRFTYAEAMTDPTYYIPLAKAAEAAGYDAMTIPDSVAYPFESESKYPYTPNGSREFLDGKAFIESFVLASALCAVTTTLR
FNFFVLKLPIRPPALVAKQAGSLAALFDNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIRGLTTGEYFEFHGEF
YDIPKTKMTPAPTKPVPILVGGHADVALKRAARCDGWMHGGGDPEELDGLIAKLNRFREEQGQSGPFEIHVISVDAFTLD
GIKRLEDKGVTDVIVGFRIPYITGADTEPLADKIRNLEWFAENVIGKL

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=196, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31843; Mature: 31843

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFTYAEAMTDPTYYIPLAKAAEAAGYDAMTIPDSVAYPFESESKYPYTPNGSREFLDGK
CCEECHHHHCCCEEEEEHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AFIESFVLASALCAVTTTLRFNFFVLKLPIRPPALVAKQAGSLAALFDNRLGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCCEEEHHHCCCCCCCCCCCC
PEDYELMNVPFAKRGKRMDECIEIIRGLTTGEYFEFHGEFYDIPKTKMTPAPTKPVPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADVALKRAARCDGWMHGGGDPEELDGLIAKLNRFREEQGQSGPFEIHVISVDAFTLD
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHH
GIKRLEDKGVTDVIVGFRIPYITGADTEPLADKIRNLEWFAENVIGKL
HHHHHHHCCCCEEEEHEEECEEECCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFTYAEAMTDPTYYIPLAKAAEAAGYDAMTIPDSVAYPFESESKYPYTPNGSREFLDGK
CCEECHHHHCCCEEEEEHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AFIESFVLASALCAVTTTLRFNFFVLKLPIRPPALVAKQAGSLAALFDNRLGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCCEEEHHHCCCCCCCCCCCC
PEDYELMNVPFAKRGKRMDECIEIIRGLTTGEYFEFHGEFYDIPKTKMTPAPTKPVPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADVALKRAARCDGWMHGGGDPEELDGLIAKLNRFREEQGQSGPFEIHVISVDAFTLD
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHH
GIKRLEDKGVTDVIVGFRIPYITGADTEPLADKIRNLEWFAENVIGKL
HHHHHHHCCCCEEEEHEEECEEECCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]