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The map label for this gene is yddE [C]

Identifier: 119868253

GI number: 119868253

Start: 2333156

End: 2333842

Strand: Reverse

Name: yddE [C]

Synonym: Mkms_2217

Alternate gene names: 119868253

Gene position: 2333842-2333156 (Counterclockwise)

Preceding gene: 119868254

Following gene: 119868250

Centisome position: 40.68

GC content: 69.87

Gene sequence:

>687_bases
ATGGCCATCGATGTCCAGGTCTTGCGTGTCTTCACCGATCCTGACGGCAACCACGGCAACCCGCTCGGCGTCGTCGACGC
GGCCGCCGTCGATCCCGGCGACCGGCAGCGCATCGCCCGTGAACTCGGCTACAGCGAAACGATTTTCGTCGACATCCCGC
AGGCCGGTGCGACGACCGCCCACATCAGGATCTTCACCCCGGCCACCGAACTTCCGTTCGCCGGGCATCCCACGGTCGGC
GCGGCGTGGTGGCTGCGGGAGAACGGGCTGCCGGTGCACACCCTGCAGGTTCCGGCCGGCATCGTGCAGGTCGGCTACGA
GGGCGACCTCACCGTGGTCAGGGCGCGCTCCGACTGGGCGCCGGAGTTCGCGATCCACGATCTGTCCTCCACCGAGGTCC
TGGCCGCCGCCGATCCGGGCGACTACTCAGACGACGCCCACCACTACCTGTGGACGTGGACCGACCGCGATGCCGGGCAC
ATCCGCGCGCGCATGTTCGCCCCGGATCTCGGAGTGCCGGAGGATGAGGCGACCGGCGCTGCGGCCGTGCGCATCACCGA
CTACCTGAGCCGCGATCTGACGATCGTGCAGGGCAAGGGTTCGGTGATCCACACCGTGTGGAGTCCCGACGGGTGGGTCA
GCATCGCCGGGCGGGTCGTCGCCGACGCCGGGCGCCGCGTGGACTGA

Upstream 100 bases:

>100_bases
GGTCCGTCGACACCCGCGTCGCGGTCCTCGACGCGATGGGCAGCGACGAACGCAGCGCGACCTGACCGCCCCGTCACCGC
CGAACACGTAGCATCGGCGC

Downstream 100 bases:

>100_bases
CCTCTCTCAGCCCGACCGCGTGACGTCCTGGTGTGCGCGCAGGGCTTCGATCTCGCGCTCGAAATCTGCTGCGGATTCAA
AGGATCGGTACACCGAGGCG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAIDVQVLRVFTDPDGNHGNPLGVVDAAAVDPGDRQRIARELGYSETIFVDIPQAGATTAHIRIFTPATELPFAGHPTVG
AAWWLRENGLPVHTLQVPAGIVQVGYEGDLTVVRARSDWAPEFAIHDLSSTEVLAAADPGDYSDDAHHYLWTWTDRDAGH
IRARMFAPDLGVPEDEATGAAAVRITDYLSRDLTIVQGKGSVIHTVWSPDGWVSIAGRVVADAGRRVD

Sequences:

>Translated_228_residues
MAIDVQVLRVFTDPDGNHGNPLGVVDAAAVDPGDRQRIARELGYSETIFVDIPQAGATTAHIRIFTPATELPFAGHPTVG
AAWWLRENGLPVHTLQVPAGIVQVGYEGDLTVVRARSDWAPEFAIHDLSSTEVLAAADPGDYSDDAHHYLWTWTDRDAGH
IRARMFAPDLGVPEDEATGAAAVRITDYLSRDLTIVQGKGSVIHTVWSPDGWVSIAGRVVADAGRRVD
>Mature_227_residues
AIDVQVLRVFTDPDGNHGNPLGVVDAAAVDPGDRQRIARELGYSETIFVDIPQAGATTAHIRIFTPATELPFAGHPTVGA
AWWLRENGLPVHTLQVPAGIVQVGYEGDLTVVRARSDWAPEFAIHDLSSTEVLAAADPGDYSDDAHHYLWTWTDRDAGHI
RARMFAPDLGVPEDEATGAAAVRITDYLSRDLTIVQGKGSVIHTVWSPDGWVSIAGRVVADAGRRVD

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 24591; Mature: 24459

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDVQVLRVFTDPDGNHGNPLGVVDAAAVDPGDRQRIARELGYSETIFVDIPQAGATTA
CEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCEE
HIRIFTPATELPFAGHPTVGAAWWLRENGLPVHTLQVPAGIVQVGYEGDLTVVRARSDWA
EEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCEEEEEECCCCC
PEFAIHDLSSTEVLAAADPGDYSDDAHHYLWTWTDRDAGHIRARMFAPDLGVPEDEATGA
CCEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCE
AAVRITDYLSRDLTIVQGKGSVIHTVWSPDGWVSIAGRVVADAGRRVD
EEEEEEHHHCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCC
>Mature Secondary Structure 
AIDVQVLRVFTDPDGNHGNPLGVVDAAAVDPGDRQRIARELGYSETIFVDIPQAGATTA
EEEEEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCEE
HIRIFTPATELPFAGHPTVGAAWWLRENGLPVHTLQVPAGIVQVGYEGDLTVVRARSDWA
EEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCEEEEEECCCCC
PEFAIHDLSSTEVLAAADPGDYSDDAHHYLWTWTDRDAGHIRARMFAPDLGVPEDEATGA
CCEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCE
AAVRITDYLSRDLTIVQGKGSVIHTVWSPDGWVSIAGRVVADAGRRVD
EEEEEEHHHCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]