| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
Click here to switch to the map view.
The map label for this gene is dacB [H]
Identifier: 119899945
GI number: 119899945
Start: 4015219
End: 4016685
Strand: Direct
Name: dacB [H]
Synonym: azo3656
Alternate gene names: 119899945
Gene position: 4015219-4016685 (Clockwise)
Preceding gene: 119899943
Following gene: 119899953
Centisome position: 91.75
GC content: 73.48
Gene sequence:
>1467_bases ATGAAGCGCGGATTCTACCGGGCACAGCCCGCAGCGGGCGCCGGCGTTGCGCGGCGCCCTGCCCCCGCTGGCCTGCTGCG CGGGCTCGCCGTGCTGCTTGTGGCCGCGGCCGCGCAACCGGCTTTCGCCGAGCTGCCGCCCGCCGTCGCCGCTGCGCTCG ACACGGCACGCATCCCCGCCGAAGCCGTCAGTGCCTGGGTGCAGCCGGTGGATGGCAGCCCGCCCGCCCTCGCGCACAAT GCCGCGCGCCCGATGAACCCGGCCTCCACGATGAAGCTGGTGACCGCGTTTGCGGCGTTCTCGCAGCTCGGCCCCGCCTA CACCTGGCACACCCGCGTCGCACGCGCCGGGGAAGTGCGCAACGGCCGCCTCGAGGGTGAGCTTTTCCTGATCGGCGGCG CCGATCCGATGCTCGACGAGGACCGGGTTCGCCGCCTGCTGCGCAAGGTGCGCGGACTTGGCGTCCAGCACATCGCCGGC GGCATCGTGCTCGATGCGTCGGCGTTGGCGCTGCCGCCGCACGACCCGGCACTGTTCGACGGCCGCCCGCTGCGCCCCTA CAACAGCGGCCCCTACGGCCTGCTGATGCATTACAACACCCTGCAGCTCGCGCTGTTTCCCGCCGAAGCCGGCGGCCCGG TCACCGTGGTGGCGGAGCCGCCGCTGGCGGGCCTCGCGCTCGAGAACCGGCTGGTGGGCGGCAGCGGCGCCTGCGAACCA TGGCAGCGCGGCCTGGAGGCGGCGCTCTCGCCGGCAGGCGGCCTCATTCTGTCCGGTTCGCTGCCGGTGGCATGCGGTGT CCGTAACTGGAGCGCCGCGCCGCTGGCGCCATCCGCCTATGCGGCGGCACTGGTCGGTGCAGTGTGGGGAGAACTGGGTG GCACCGCCGGCAACGCGGTGCGCGAGGCGGTCACGCCGGGCAGCGCGACGATCCTGCTCGACGAGGAATCGCGGCCGCTG GCCGACGTGATACGCGACATGAACAAGTGGTCCAGCAACGTCATCGCGCGCCAGCTCCTCGCCACGCTCGGCATGAACCA GCCGGGGGACGCGGTTCAGGCCGGCGCGGCCGCGGCCCAGCGCGCGCTCGCGGCGGCCGGCATCGACACCAGCGGCCTGG TGATCGAAAACGGCGCCGGTCTGTCCCGCCTGGAACGCGTGCGCGCCGACACCCTGGCCGCAACGCTGCTGGCCGCGTGG CAACGGCCCTGGATGCCCGAGTACATCGCCGCGCTGCCGGTGGCGGGCGTGGATGGCACCGCGCGCCGCCGCCTCAACGG CAGCCCCGCCAACGGCTACGCCCACCTCAAGACCGGCACGCTGGAAGGCGTGCGCGCAATGGCGGGCTATGTGACCGACG CCCGCGGGCAGCGTCACATCGTCGTCATGATGGTGAATCACCCCCAGGCAGCGGCCAGCGCGGCGGCGCAGGATGCCTTG GTGGAGTGGGTGTGGGCCGGACGCTGA
Upstream 100 bases:
>100_bases GTTCGATTGCATCCCGCGCGTAGTGTCCGAAGCCGCTCATGCCCACCTATCCTTTTCCGCCCGCTGCCGCCTTGCCATGC CTGATGCCGCGGCCCTTGCG
Downstream 100 bases:
>100_bases GCGCCCGTTCGCGCGGTCAATCGACAGGCAGCGGCTGGCGCTGGCTCAGCGCCCACCACCCGCGCGCCACGCGGTAAAGC ACCCACAGCCCGGTTACGAC
Product: Serine-type D-Ala-D-Ala carboxypeptidase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]
Number of amino acids: Translated: 488; Mature: 488
Protein sequence:
>488_residues MKRGFYRAQPAAGAGVARRPAPAGLLRGLAVLLVAAAAQPAFAELPPAVAAALDTARIPAEAVSAWVQPVDGSPPALAHN AARPMNPASTMKLVTAFAAFSQLGPAYTWHTRVARAGEVRNGRLEGELFLIGGADPMLDEDRVRRLLRKVRGLGVQHIAG GIVLDASALALPPHDPALFDGRPLRPYNSGPYGLLMHYNTLQLALFPAEAGGPVTVVAEPPLAGLALENRLVGGSGACEP WQRGLEAALSPAGGLILSGSLPVACGVRNWSAAPLAPSAYAAALVGAVWGELGGTAGNAVREAVTPGSATILLDEESRPL ADVIRDMNKWSSNVIARQLLATLGMNQPGDAVQAGAAAAQRALAAAGIDTSGLVIENGAGLSRLERVRADTLAATLLAAW QRPWMPEYIAALPVAGVDGTARRRLNGSPANGYAHLKTGTLEGVRAMAGYVTDARGQRHIVVMMVNHPQAAASAAAQDAL VEWVWAGR
Sequences:
>Translated_488_residues MKRGFYRAQPAAGAGVARRPAPAGLLRGLAVLLVAAAAQPAFAELPPAVAAALDTARIPAEAVSAWVQPVDGSPPALAHN AARPMNPASTMKLVTAFAAFSQLGPAYTWHTRVARAGEVRNGRLEGELFLIGGADPMLDEDRVRRLLRKVRGLGVQHIAG GIVLDASALALPPHDPALFDGRPLRPYNSGPYGLLMHYNTLQLALFPAEAGGPVTVVAEPPLAGLALENRLVGGSGACEP WQRGLEAALSPAGGLILSGSLPVACGVRNWSAAPLAPSAYAAALVGAVWGELGGTAGNAVREAVTPGSATILLDEESRPL ADVIRDMNKWSSNVIARQLLATLGMNQPGDAVQAGAAAAQRALAAAGIDTSGLVIENGAGLSRLERVRADTLAATLLAAW QRPWMPEYIAALPVAGVDGTARRRLNGSPANGYAHLKTGTLEGVRAMAGYVTDARGQRHIVVMMVNHPQAAASAAAQDAL VEWVWAGR >Mature_488_residues MKRGFYRAQPAAGAGVARRPAPAGLLRGLAVLLVAAAAQPAFAELPPAVAAALDTARIPAEAVSAWVQPVDGSPPALAHN AARPMNPASTMKLVTAFAAFSQLGPAYTWHTRVARAGEVRNGRLEGELFLIGGADPMLDEDRVRRLLRKVRGLGVQHIAG GIVLDASALALPPHDPALFDGRPLRPYNSGPYGLLMHYNTLQLALFPAEAGGPVTVVAEPPLAGLALENRLVGGSGACEP WQRGLEAALSPAGGLILSGSLPVACGVRNWSAAPLAPSAYAAALVGAVWGELGGTAGNAVREAVTPGSATILLDEESRPL ADVIRDMNKWSSNVIARQLLATLGMNQPGDAVQAGAAAAQRALAAAGIDTSGLVIENGAGLSRLERVRADTLAATLLAAW QRPWMPEYIAALPVAGVDGTARRRLNGSPANGYAHLKTGTLEGVRAMAGYVTDARGQRHIVVMMVNHPQAAASAAAQDAL VEWVWAGR
Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=457, Percent_Identity=28.8840262582057, Blast_Score=151, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 50380; Mature: 50380
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRGFYRAQPAAGAGVARRPAPAGLLRGLAVLLVAAAAQPAFAELPPAVAAALDTARIPA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCH EAVSAWVQPVDGSPPALAHNAARPMNPASTMKLVTAFAAFSQLGPAYTWHTRVARAGEVR HHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCC NGRLEGELFLIGGADPMLDEDRVRRLLRKVRGLGVQHIAGGIVLDASALALPPHDPALFD CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCEEECCCCCCCCCC GRPLRPYNSGPYGLLMHYNTLQLALFPAEAGGPVTVVAEPPLAGLALENRLVGGSGACEP CCCCCCCCCCCCEEEEEECEEEEEEEECCCCCCEEEEECCCCCCHHHHCEECCCCCCCHH WQRGLEAALSPAGGLILSGSLPVACGVRNWSAAPLAPSAYAAALVGAVWGELGGTAGNAV HHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH REAVTPGSATILLDEESRPLADVIRDMNKWSSNVIARQLLATLGMNQPGDAVQAGAAAAQ HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RALAAAGIDTSGLVIENGAGLSRLERVRADTLAATLLAAWQRPWMPEYIAALPVAGVDGT HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHH ARRRLNGSPANGYAHLKTGTLEGVRAMAGYVTDARGQRHIVVMMVNHPQAAASAAAQDAL HHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH VEWVWAGR HHHHHCCC >Mature Secondary Structure MKRGFYRAQPAAGAGVARRPAPAGLLRGLAVLLVAAAAQPAFAELPPAVAAALDTARIPA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCH EAVSAWVQPVDGSPPALAHNAARPMNPASTMKLVTAFAAFSQLGPAYTWHTRVARAGEVR HHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCC NGRLEGELFLIGGADPMLDEDRVRRLLRKVRGLGVQHIAGGIVLDASALALPPHDPALFD CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCEEEECCEEECCCCCCCCCC GRPLRPYNSGPYGLLMHYNTLQLALFPAEAGGPVTVVAEPPLAGLALENRLVGGSGACEP CCCCCCCCCCCCEEEEEECEEEEEEEECCCCCCEEEEECCCCCCHHHHCEECCCCCCCHH WQRGLEAALSPAGGLILSGSLPVACGVRNWSAAPLAPSAYAAALVGAVWGELGGTAGNAV HHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH REAVTPGSATILLDEESRPLADVIRDMNKWSSNVIARQLLATLGMNQPGDAVQAGAAAAQ HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RALAAAGIDTSGLVIENGAGLSRLERVRADTLAATLLAAWQRPWMPEYIAALPVAGVDGT HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHH ARRRLNGSPANGYAHLKTGTLEGVRAMAGYVTDARGQRHIVVMMVNHPQAAASAAAQDAL HHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH VEWVWAGR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2040429; 9278503; 2046551 [H]