Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 119899156

GI number: 119899156

Start: 3146175

End: 3147203

Strand: Direct

Name: yciR [C]

Synonym: azo2866

Alternate gene names: 119899156

Gene position: 3146175-3147203 (Clockwise)

Preceding gene: 119899155

Following gene: 119899158

Centisome position: 71.9

GC content: 71.53

Gene sequence:

>1029_bases
ATGCCCAGCCAGGACGAGTATTTCGCCGCCGTATTCGACGTCACCCCCGTCGGCATTGCCATTGCCGACGAGCGCGGGCA
TTACGTCGATGTGAATCCGACCTACTGCAGGATGTTCGGCTACGCGCGCGAGGAACTGATCGGGCAGAGCTTCCGCCTGA
TCCTGCGCCCCGAGGACCGGCACCTGGAGGCCGACATCCTGCGCATGGCGCTGTCGCACGACCGCAGCGCACCCAACGAA
TGGCAGGTGCGCACGCGCGACGGCGGCACGCTGACGGTGCGCTCCAGCTTCCGCCCCCTGCAGGCGCCCGACGGCAGCAC
GCGGGTGGTCACCGCGCTGGCCGACGTCACCGCGCTGTACGACACCATCGACCGCCTGCGCGACAGCGAGCACCGCCTGC
AGGAACTCAACGCCGATCTGGAACACCTGGTGGCCGCGCGGACCGCCGAACTGGCCGAGCGCAACCGCGAGTTGAGCGAC
GCGGTGGCCAAGCTCGAAGCGAGCCGCGCCCGCGTCGAACACCTGGCGCTGCACGACCCGCTGACCGGCCTGCCCAACCG
CACCCAGCTGCGCCAGGTGCTGGACGAAATGCTGGCGCTGCCGGGCAGCTTCGGCGTGCTGTTCATCGACCTCGACGGCT
TCAAGCCGGTCAATGACACCCTCGGCCACGACAGCGGCGACCTCGTGCTGGTCACGGTGGCGCAGCGGCTGCGCGAGGCG
CTGCCGGCCGAGTGCTTCGTCGGCCGCCTGGGCGGCGACGAGTTCGTCGCGGTACTGCCGCATACCGACCGCGCCGCCGC
GTGCGCGGTGGGCGAAAAGCTGATCGCCGCGCTGGCCGCGCCCATCGTCATCGAAGGCGGCGCGCAGTGCCAGCTGGGCG
CCAGCATCGGCGTCGCGCTCGGGCCGCAGCACGGGCGCAACCGCCGCAGCCTGCTCACCGCGGCTGACCGTGCGATGTAC
GCGGCCAAGCGCAGCGGCAAGGGCCGCGTCGCGGTGGCTGGCGAAGACAGCGCGGCCTCGGCCGCCTAG

Upstream 100 bases:

>100_bases
TCGGCGATCACGCGCGCACCGCTGTAAGCGGCTCACCCCGGGCGCGGCGATGCCACTACAATCGCCGCTTCCGCGTTTCA
GCCGGGGCCGCCGGACCGCC

Downstream 100 bases:

>100_bases
GGCCTCAACCGGCCCCGCGCGCGCTCCACCGCCTCACACTCCGCCCACGGCACGGTGGCGAAAGCCGCCGCCAGGTAATC
CAGCAGCACCCTCACCTTCA

Product: GGDEF/PAS/PAC-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPSQDEYFAAVFDVTPVGIAIADERGHYVDVNPTYCRMFGYAREELIGQSFRLILRPEDRHLEADILRMALSHDRSAPNE
WQVRTRDGGTLTVRSSFRPLQAPDGSTRVVTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSD
AVAKLEASRARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDLVLVTVAQRLREA
LPAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALAAPIVIEGGAQCQLGASIGVALGPQHGRNRRSLLTAADRAMY
AAKRSGKGRVAVAGEDSAASAA

Sequences:

>Translated_342_residues
MPSQDEYFAAVFDVTPVGIAIADERGHYVDVNPTYCRMFGYAREELIGQSFRLILRPEDRHLEADILRMALSHDRSAPNE
WQVRTRDGGTLTVRSSFRPLQAPDGSTRVVTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSD
AVAKLEASRARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDLVLVTVAQRLREA
LPAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALAAPIVIEGGAQCQLGASIGVALGPQHGRNRRSLLTAADRAMY
AAKRSGKGRVAVAGEDSAASAA
>Mature_341_residues
PSQDEYFAAVFDVTPVGIAIADERGHYVDVNPTYCRMFGYAREELIGQSFRLILRPEDRHLEADILRMALSHDRSAPNEW
QVRTRDGGTLTVRSSFRPLQAPDGSTRVVTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDA
VAKLEASRARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDLVLVTVAQRLREAL
PAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALAAPIVIEGGAQCQLGASIGVALGPQHGRNRRSLLTAADRAMYA
AKRSGKGRVAVAGEDSAASAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=35.3293413173653, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=323, Percent_Identity=28.1733746130031, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788956, Length=219, Percent_Identity=31.9634703196347, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87081921, Length=188, Percent_Identity=34.0425531914894, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081977, Length=262, Percent_Identity=28.6259541984733, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=32.5714285714286, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=35.031847133758, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=36.094674556213, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=34.2857142857143, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=30.9090909090909, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=29.559748427673, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=205, Percent_Identity=24.390243902439, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=26.8156424581006, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 37013; Mature: 36882

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQDEYFAAVFDVTPVGIAIADERGHYVDVNPTYCRMFGYAREELIGQSFRLILRPEDR
CCCCCCEEEEEEECCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC
HLEADILRMALSHDRSAPNEWQVRTRDGGTLTVRSSFRPLQAPDGSTRVVTALADVTALY
CHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
DTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDAVAKLEASRARVEHLALHDP
HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDLVLVTVAQRLREA
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCEEEEHHHHHHHHH
LPAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALAAPIVIEGGAQCQLGASIGVAL
CCHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCEEECCCCCEEE
GPQHGRNRRSLLTAADRAMYAAKRSGKGRVAVAGEDSAASAA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
PSQDEYFAAVFDVTPVGIAIADERGHYVDVNPTYCRMFGYAREELIGQSFRLILRPEDR
CCCCCEEEEEEECCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC
HLEADILRMALSHDRSAPNEWQVRTRDGGTLTVRSSFRPLQAPDGSTRVVTALADVTALY
CHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
DTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDAVAKLEASRARVEHLALHDP
HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDLVLVTVAQRLREA
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCEEEEHHHHHHHHH
LPAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALAAPIVIEGGAQCQLGASIGVAL
CCHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCEEECCCCCEEE
GPQHGRNRRSLLTAADRAMYAAKRSGKGRVAVAGEDSAASAA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]