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The map label for this gene is ygiD [H]

Identifier: 119899158

GI number: 119899158

Start: 3148259

End: 3149065

Strand: Direct

Name: ygiD [H]

Synonym: azo2868

Alternate gene names: 119899158

Gene position: 3148259-3149065 (Clockwise)

Preceding gene: 119899156

Following gene: 119899159

Centisome position: 71.94

GC content: 72.24

Gene sequence:

>807_bases
ATGACGACCACGCATCCCGCCCCGCTGCCCACGCTGTTCGTTTCCCACGGCTCCCCGATGTTCGCCCTCAATCCGGGCGA
AGCCGGCCCGGTGCTGGCTGCCTTTGCCGCCCGCGTGCCGCGTCCGCGCGCAGTGGTGGCGGTGTCGCCGCACTGGATGA
CGCGCTCGCCCGAAGTGCTCGCGAGCGCGCAGCCGGCCACGGTGCACGACTTCGGCGGCTTTCCGCGCGAACTGTATGCG
CTGGACTACCCGGCGCCCGGCGCGCCCGGTGTCGCCGCCGAAGTCATCGCGCTGCTCGCCGGCCACGGCGTGACGGTGCA
GGCCAACGAACTGGCCGGGCGCGACCACGGCACCTGGGTGCCGCTGATGCACCTGTATCCGGACGCCGACGTGCCGGTGA
TCCAGCTCTCGCAGCCGGCCACGCGCTCGCCGTTGGTGCTGCTGGAACTGGGCCGCGCGCTGGCGCCGCTGCGCGAGCAG
GGCATCCTGCTGATGGGTTCGGGCAGCATCACCCACAACCTGTACGAATTCCGCGCGCCGCGCGATCCCGACGACCACTA
CGCGAGCGAATTCACCGACTGGATGTGGAACACGATCGCGGCCGGTGACCTCGAAGCCTTGCTCGACTACCGCACCCGGG
CGCCGCACGCGGTGCGCGCCCACCCCACCGACGAGCACCTGTTGCCGCTGTACTTCGCACTCGGCGCCGCGGGCGCGGCC
TGGACCCGGGCAACCCGGCTGCCCGGCGGCGTCACCGACGGCGTGCTGGCAATGGACAGCTTCGCGTTCGGCGACGCCAC
GGCCTGA

Upstream 100 bases:

>100_bases
CGTTTGACAGTCTGTCAATTGAAGACGGATTTATCGCCATCTTGGGTTTCAATAAAGTGCCTTCATCGACGCCGGCCCGA
TGCCGGGGAGGACGCTCACC

Downstream 100 bases:

>100_bases
TCAGGAGGACGTCCGCATGCACACCCCGCCCGCCCATCCCGCCGCCCGCTACACCGGCACCGCGATCGCGCTGCACTGGC
TGATCGCGCTCGCGCTGTTC

Product: protocatechuate 4,5-dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVLASAQPATVHDFGGFPRELYA
LDYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWVPLMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQ
GILLMGSGSITHNLYEFRAPRDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGAA
WTRATRLPGGVTDGVLAMDSFAFGDATA

Sequences:

>Translated_268_residues
MTTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVLASAQPATVHDFGGFPRELYA
LDYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWVPLMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQ
GILLMGSGSITHNLYEFRAPRDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGAA
WTRATRLPGGVTDGVLAMDSFAFGDATA
>Mature_267_residues
TTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVLASAQPATVHDFGGFPRELYAL
DYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWVPLMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQG
ILLMGSGSITHNLYEFRAPRDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGAAW
TRATRLPGGVTDGVLAMDSFAFGDATA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=261, Percent_Identity=38.6973180076628, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28539; Mature: 28408

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVL
CCCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
ASAQPATVHDFGGFPRELYALDYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWV
HCCCCCEEHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCCCCCCEE
PLMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQGILLMGSGSITHNLYEFRAP
EEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCC
RDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGAA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCHH
WTRATRLPGGVTDGVLAMDSFAFGDATA
HHHHHCCCCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVL
CCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
ASAQPATVHDFGGFPRELYALDYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWV
HCCCCCEEHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCCCCCCEE
PLMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQGILLMGSGSITHNLYEFRAP
EEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCC
RDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGAA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCHH
WTRATRLPGGVTDGVLAMDSFAFGDATA
HHHHHCCCCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]