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The map label for this gene is ycfF [C]

Identifier: 119897790

GI number: 119897790

Start: 1641332

End: 1641760

Strand: Reverse

Name: ycfF [C]

Synonym: azo1499

Alternate gene names: 119897790

Gene position: 1641760-1641332 (Counterclockwise)

Preceding gene: 119897794

Following gene: 119897788

Centisome position: 37.52

GC content: 70.16

Gene sequence:

>429_bases
ATGTCCTACGACAACAACAACGTCTTCGCCCGCATCCTGCGCGGCGAACTGCCCTGCCAGAAACTCTACGAGGACGACGC
CACCTTCGCCTTCCTCGACATCATGCCGCAGTCCGACGGCCACAGCCTGGTGCTGCCCAAGGAGCCGGCGGCGGTGCTCG
CCGACCTTTCACCGGCCGCGCTGCAGGCGACGATGCTGACCACGCAGAAGCTCGCGCGTGCGGTGCAGCAGGCCACCGGC
GCGCCCGGCCTCCGGATCGCGCAGTTCAATGGCGCCGTCGCCGGCCAGACGGTGCCGCACGTGCATTTCCACATCATCCC
GTGCTACCCGCAGCAGGAACTGCGCGCCCACGCGCGCGAAAGCGCCGACCCCGCGGCGCTGGCGGCAATGCGCGAGAAGG
TGGTGGCGGCGCTCGCCGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
GGGCGACGCGGCGGCGTGGGCCGATATAATCGCGGGCATCTGCGCGGCCCGGCGCCCACCGCCTGCCGACCATCCTCACC
CATCAAGGAAGAGACCGCCC

Downstream 100 bases:

>100_bases
ACGCCGGCGCTCAGCGGGCCGGCGGCCGCTCCTCGCCGCCGTCGGCGCCGCGCTGCATGTCCTCCACCACCACCCACAGC
GCATTGGTGGAGATCAGCAC

Product: HIT family protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSYDNNNVFARILRGELPCQKLYEDDATFAFLDIMPQSDGHSLVLPKEPAAVLADLSPAALQATMLTTQKLARAVQQATG
APGLRIAQFNGAVAGQTVPHVHFHIIPCYPQQELRAHARESADPAALAAMREKVVAALAALG

Sequences:

>Translated_142_residues
MSYDNNNVFARILRGELPCQKLYEDDATFAFLDIMPQSDGHSLVLPKEPAAVLADLSPAALQATMLTTQKLARAVQQATG
APGLRIAQFNGAVAGQTVPHVHFHIIPCYPQQELRAHARESADPAALAAMREKVVAALAALG
>Mature_141_residues
SYDNNNVFARILRGELPCQKLYEDDATFAFLDIMPQSDGHSLVLPKEPAAVLADLSPAALQATMLTTQKLARAVQQATGA
PGLRIAQFNGAVAGQTVPHVHFHIIPCYPQQELRAHARESADPAALAAMREKVVAALAALG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17506713, Length=105, Percent_Identity=35.2380952380952, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6320078, Length=100, Percent_Identity=40, Blast_Score=81, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24581222, Length=105, Percent_Identity=36.1904761904762, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574010, Length=105, Percent_Identity=36.1904761904762, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 15185; Mature: 15053

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYDNNNVFARILRGELPCQKLYEDDATFAFLDIMPQSDGHSLVLPKEPAAVLADLSPAA
CCCCCCHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHCCCHHH
LQATMLTTQKLARAVQQATGAPGLRIAQFNGAVAGQTVPHVHFHIIPCYPQQELRAHARE
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHC
SADPAALAAMREKVVAALAALG
CCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYDNNNVFARILRGELPCQKLYEDDATFAFLDIMPQSDGHSLVLPKEPAAVLADLSPAA
CCCCCHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHCCCHHH
LQATMLTTQKLARAVQQATGAPGLRIAQFNGAVAGQTVPHVHFHIIPCYPQQELRAHARE
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHC
SADPAALAAMREKVVAALAALG
CCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664449; 1472710 [H]