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The map label for this gene is ydfD [H]

Identifier: 119897134

GI number: 119897134

Start: 905906

End: 907309

Strand: Reverse

Name: ydfD [H]

Synonym: azo0843

Alternate gene names: 119897134

Gene position: 907309-905906 (Counterclockwise)

Preceding gene: 119897142

Following gene: 119897132

Centisome position: 20.73

GC content: 69.16

Gene sequence:

>1404_bases
ATGCTGATGGTGAGCCTCGACAGCACCCACCCCACCCCGCTGGTGGAACAGATCGTGGGGGCGGTGCGCAGCCAGATCGA
CGACCGCATCCTGCGGCCCGGAATGCGCCTGCCGCCGATCCGCAAGTTCGCGGAAACCCAGCGGGTGAGCCGGTTCACCG
TCGTCGAGGCGTACGACCGCCTGGTCGCGCTCGGCTACCTGCGCTCGCGCCGTGGTTCGGGCTTCTTCGTCGCGCCGCGC
CACGAGGGGGGCGACGGCCGCCCCCAGGCGGAAACGGACCGCGCGGTCGATGTCGCATGGCTGATGCGCCAAGTCCTCGA
CGACCGCCCGGGCCTGATCAAGGCCAGCGCAGGCTGGCTGCCCGACGACTGGCTGGACCAGGACGGCCTGCGCCGCCACC
TGCGCACACTGTCGCGCCGGGCGGACGCGCGCCTGACCGGTTACGGCACGCCCCAGGGCTATCTGCCGCTGCGCCAGCAA
CTGCAGGTGCGACTGGCGGAATTCGGCATCGGCGCCGCGCCGGGGCAGATCGTGCTGACCGAGGGCGCCACCAGCGCGCT
CGACATCGTCGCCCGCCATCTGATCAAGCCCGGCGACACCGTGCTGGTGGACGACCCCGGCTACTACAACTTCTTCGGCA
ACCTGCGGCTGCAGGGCGCCAAGCTGGTGGGCGTGCCGCGGCTGGCGGACGGCCCCGACGTCGAGGCGCTGGAAGCGCTG
CTCGAACATCACCAGCCGCGCGTGTTCTTCACCCACTCGGTGCTGCACAACCCCACCGGCTCGGACCTGTCACCGGCGGT
CGCTTTCCGCATCCTGCAACTGGCCGAAAAGCACGACTTCCTGATCATCGAGGACGACACCTACGCCGACTTCCATCCGC
ACAACAGCGCGCGGCTGGCCACGCTGGACCAGCTCGAACGGGTGATTTTCGTCGGCAGCTTCTCGAAAACCCTGTCCGGC
AGCCTGCGGGTCGGCTTCCTCGCGGCGCGGCCGGACCTGGTGGCCGAAATGACCGACGTGAAGCTGCTGACCACGCTGTG
CTCATCGGAATTCAGCGAGCAGCTGGTGTATCAGATGCTGACCGACGGCCACTACCGCAAGTACCTGGAACGCATGCAGA
GCCGACTGGCGCAGGCGACCGAAACCACGCTGCGCCTGCTGGAACGCTGCGGACTCGAAACCTTCGTGGAGCCGCGCGGC
GGCGTATTCGTGTGGGCGCGCGTGCCCGAGCTCGACGACAGCGCGGCGCTCGCCTCCCGCGCCGCGCTGCAGAACATCAT
GCTGGCGCCGGGCAAGGCCTTCCGCCCGCAGATGCAGGCCAGCCCGTGGCTGCGCTTCAACGTCGCGTTCTCGGCGGAGA
AAGTGCTCGAACGCTTTCTCGGCGACACGCTCGCGGCACTGTGA

Upstream 100 bases:

>100_bases
AATGGACACTCGCGCCGCTGCGCCGCAACCCGTACCGGTGGCGCGGGCAGTACGCCGCCGGTCGTGCGGCCGGCCCGTCC
GCTTGCCCAAGGAGAACCCG

Downstream 100 bases:

>100_bases
GCGCGGCGCGCGTCAGCGCGATTCAAGGATCAGGCGGCCGTTGGCGGGCTGGATGGGTCGCGCGTTGCGTGGATACAGGC
GGGCGAAGATGCCGAGCTGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MLMVSLDSTHPTPLVEQIVGAVRSQIDDRILRPGMRLPPIRKFAETQRVSRFTVVEAYDRLVALGYLRSRRGSGFFVAPR
HEGGDGRPQAETDRAVDVAWLMRQVLDDRPGLIKASAGWLPDDWLDQDGLRRHLRTLSRRADARLTGYGTPQGYLPLRQQ
LQVRLAEFGIGAAPGQIVLTEGATSALDIVARHLIKPGDTVLVDDPGYYNFFGNLRLQGAKLVGVPRLADGPDVEALEAL
LEHHQPRVFFTHSVLHNPTGSDLSPAVAFRILQLAEKHDFLIIEDDTYADFHPHNSARLATLDQLERVIFVGSFSKTLSG
SLRVGFLAARPDLVAEMTDVKLLTTLCSSEFSEQLVYQMLTDGHYRKYLERMQSRLAQATETTLRLLERCGLETFVEPRG
GVFVWARVPELDDSAALASRAALQNIMLAPGKAFRPQMQASPWLRFNVAFSAEKVLERFLGDTLAAL

Sequences:

>Translated_467_residues
MLMVSLDSTHPTPLVEQIVGAVRSQIDDRILRPGMRLPPIRKFAETQRVSRFTVVEAYDRLVALGYLRSRRGSGFFVAPR
HEGGDGRPQAETDRAVDVAWLMRQVLDDRPGLIKASAGWLPDDWLDQDGLRRHLRTLSRRADARLTGYGTPQGYLPLRQQ
LQVRLAEFGIGAAPGQIVLTEGATSALDIVARHLIKPGDTVLVDDPGYYNFFGNLRLQGAKLVGVPRLADGPDVEALEAL
LEHHQPRVFFTHSVLHNPTGSDLSPAVAFRILQLAEKHDFLIIEDDTYADFHPHNSARLATLDQLERVIFVGSFSKTLSG
SLRVGFLAARPDLVAEMTDVKLLTTLCSSEFSEQLVYQMLTDGHYRKYLERMQSRLAQATETTLRLLERCGLETFVEPRG
GVFVWARVPELDDSAALASRAALQNIMLAPGKAFRPQMQASPWLRFNVAFSAEKVLERFLGDTLAAL
>Mature_467_residues
MLMVSLDSTHPTPLVEQIVGAVRSQIDDRILRPGMRLPPIRKFAETQRVSRFTVVEAYDRLVALGYLRSRRGSGFFVAPR
HEGGDGRPQAETDRAVDVAWLMRQVLDDRPGLIKASAGWLPDDWLDQDGLRRHLRTLSRRADARLTGYGTPQGYLPLRQQ
LQVRLAEFGIGAAPGQIVLTEGATSALDIVARHLIKPGDTVLVDDPGYYNFFGNLRLQGAKLVGVPRLADGPDVEALEAL
LEHHQPRVFFTHSVLHNPTGSDLSPAVAFRILQLAEKHDFLIIEDDTYADFHPHNSARLATLDQLERVIFVGSFSKTLSG
SLRVGFLAARPDLVAEMTDVKLLTTLCSSEFSEQLVYQMLTDGHYRKYLERMQSRLAQATETTLRLLERCGLETFVEPRG
GVFVWARVPELDDSAALASRAALQNIMLAPGKAFRPQMQASPWLRFNVAFSAEKVLERFLGDTLAAL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=335, Percent_Identity=28.6567164179104, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI33469970, Length=335, Percent_Identity=28.6567164179104, Blast_Score=116, Evalue=5e-26,
Organism=Escherichia coli, GI1787710, Length=444, Percent_Identity=29.2792792792793, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1790797, Length=444, Percent_Identity=27.7027027027027, Blast_Score=135, Evalue=5e-33,
Organism=Saccharomyces cerevisiae, GI6321929, Length=352, Percent_Identity=24.7159090909091, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21356535, Length=351, Percent_Identity=26.7806267806268, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52026; Mature: 52026

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMVSLDSTHPTPLVEQIVGAVRSQIDDRILRPGMRLPPIRKFAETQRVSRFTVVEAYDR
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVALGYLRSRRGSGFFVAPRHEGGDGRPQAETDRAVDVAWLMRQVLDDRPGLIKASAGWL
HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
PDDWLDQDGLRRHLRTLSRRADARLTGYGTPQGYLPLRQQLQVRLAEFGIGAAPGQIVLT
CCHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
EGATSALDIVARHLIKPGDTVLVDDPGYYNFFGNLRLQGAKLVGVPRLADGPDVEALEAL
CCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEECEEECCEEEECCCCCCCCCCHHHHHHH
LEHHQPRVFFTHSVLHNPTGSDLSPAVAFRILQLAEKHDFLIIEDDTYADFHPHNSARLA
HHHCCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHH
TLDQLERVIFVGSFSKTLSGSLRVGFLAARPDLVAEMTDVKLLTTLCSSEFSEQLVYQML
HHHHHHHEEEEECCHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDGHYRKYLERMQSRLAQATETTLRLLERCGLETFVEPRGGVFVWARVPELDDSAALASR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCEEEEEECCCCCCHHHHHHH
AALQNIMLAPGKAFRPQMQASPWLRFNVAFSAEKVLERFLGDTLAAL
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLMVSLDSTHPTPLVEQIVGAVRSQIDDRILRPGMRLPPIRKFAETQRVSRFTVVEAYDR
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVALGYLRSRRGSGFFVAPRHEGGDGRPQAETDRAVDVAWLMRQVLDDRPGLIKASAGWL
HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
PDDWLDQDGLRRHLRTLSRRADARLTGYGTPQGYLPLRQQLQVRLAEFGIGAAPGQIVLT
CCHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
EGATSALDIVARHLIKPGDTVLVDDPGYYNFFGNLRLQGAKLVGVPRLADGPDVEALEAL
CCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEECEEECCEEEECCCCCCCCCCHHHHHHH
LEHHQPRVFFTHSVLHNPTGSDLSPAVAFRILQLAEKHDFLIIEDDTYADFHPHNSARLA
HHHCCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHH
TLDQLERVIFVGSFSKTLSGSLRVGFLAARPDLVAEMTDVKLLTTLCSSEFSEQLVYQML
HHHHHHHEEEEECCHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDGHYRKYLERMQSRLAQATETTLRLLERCGLETFVEPRGGVFVWARVPELDDSAALASR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCEEEEEECCCCCCHHHHHHH
AALQNIMLAPGKAFRPQMQASPWLRFNVAFSAEKVLERFLGDTLAAL
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]