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The map label for this gene is rlpA [C]

Identifier: 119896471

GI number: 119896471

Start: 195800

End: 196840

Strand: Direct

Name: rlpA [C]

Synonym: azo0179

Alternate gene names: 119896471

Gene position: 195800-196840 (Clockwise)

Preceding gene: 119896470

Following gene: 119896472

Centisome position: 4.47

GC content: 72.43

Gene sequence:

>1041_bases
GTGGCCGTCCCGCGTCCTGATCTGCCTGCCGTCATGATGATGAAGTCCGTCCCCGCCGCCTTCACCCTCCGTGCCCGCCC
GCTGACGCTCGTGGTGGCGAGCTGTTGCGCCGCCTGGTTGGCGGGCTGCAGCACCGCGCCGGTGCAGGAGTCGAGCGCAC
CGGGCGCCCGTCCGTCCCCGCCTCCGCCGGTGGCCTCTCCCGCGCCGGCACCCGCCAAGCGCGGTGGCGCTTACTACAAG
GACGACGGCCCCGGTGACAACCCGCCGGACAACCTCGACGCGGTGCCGGACGCCCAGCCGCGGCTCGAACCGCTGCACCG
CTTCGCCAACCGCCCGTACAACGTCTTTGGCCAGGACTATGTCCCCGCCACCCGCCTCGCCCCGTTCCGCGAACGCGGCC
TCGCCAGCTGGTACGGCCGCCGCTTCCATGGCGGGAACACCTCGAGCGGCGAGCCCTACGACATGTACGCGATGACGGCC
GCCCATCCCACGCTGCCGATCCCGAGCTATGCGCGCGTCACCAACGTCGCCACCGGGCGGTCGGTAGTGGTGCGCATCAA
CGACCGCGGTCCCTTCCACAAGGGCCGCATCATGGACCTCTCCTATACCGCGGCCTACCGTCTTGGCTATGTGAACGGCG
GCAGCGCCGAGGTCGAGGTGGAGCAGATCCTGCCCGACGAAGTGCCGATGGAGGCGATGTCGCCCCCGGTGCCACCGCTG
CCCGGTCGCAGGGTGCCGCCGGCGCTGGCAGCCGCAGCGCCGGACCCCGCGCCCGCCACCGCCGCACCCGCGTCGCCATC
GGCCGGCGCGGTTGCCTTCTTCCTGCAGCTCGGCGCGTTCGCCTCGCGCGACAACGCGGAAGGCTTCCGCGCCACCGTCC
AGCGCGACCTTGCTGCGTTCGCACAGCGGGTCGATCTGCTCGCCGAGGGCGGACGGTTCCGCCTGCACGCCGGCCCCTAC
GCCAGCGAGAACGAGGCCCGGGTCGCGGCCGAGCGCATTGCCGCCACGCTCAAGCTCAAACCCTTCGTCGTGGCGCGTTG
A

Upstream 100 bases:

>100_bases
ATCCTGCCGGTGGTGGGTGTGCCCTTGCCATTCATCAGCTATGGTGGGACGGCACTGGTCACCTTGTGCCTCGGGGTGGG
TATCCTGATGGGCATCCGCC

Downstream 100 bases:

>100_bases
TGAGGACGCGGGGCCAAGGATGAAACAAACCCTGTCCCCGCCGGTCTGTGCCCTGGGCTGCGTCCTATAATTCCGCTCCC
CGCGCGTCATCCCCGTCCTT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MAVPRPDLPAVMMMKSVPAAFTLRARPLTLVVASCCAAWLAGCSTAPVQESSAPGARPSPPPPVASPAPAPAKRGGAYYK
DDGPGDNPPDNLDAVPDAQPRLEPLHRFANRPYNVFGQDYVPATRLAPFRERGLASWYGRRFHGGNTSSGEPYDMYAMTA
AHPTLPIPSYARVTNVATGRSVVVRINDRGPFHKGRIMDLSYTAAYRLGYVNGGSAEVEVEQILPDEVPMEAMSPPVPPL
PGRRVPPALAAAAPDPAPATAAPASPSAGAVAFFLQLGAFASRDNAEGFRATVQRDLAAFAQRVDLLAEGGRFRLHAGPY
ASENEARVAAERIAATLKLKPFVVAR

Sequences:

>Translated_346_residues
MAVPRPDLPAVMMMKSVPAAFTLRARPLTLVVASCCAAWLAGCSTAPVQESSAPGARPSPPPPVASPAPAPAKRGGAYYK
DDGPGDNPPDNLDAVPDAQPRLEPLHRFANRPYNVFGQDYVPATRLAPFRERGLASWYGRRFHGGNTSSGEPYDMYAMTA
AHPTLPIPSYARVTNVATGRSVVVRINDRGPFHKGRIMDLSYTAAYRLGYVNGGSAEVEVEQILPDEVPMEAMSPPVPPL
PGRRVPPALAAAAPDPAPATAAPASPSAGAVAFFLQLGAFASRDNAEGFRATVQRDLAAFAQRVDLLAEGGRFRLHAGPY
ASENEARVAAERIAATLKLKPFVVAR
>Mature_345_residues
AVPRPDLPAVMMMKSVPAAFTLRARPLTLVVASCCAAWLAGCSTAPVQESSAPGARPSPPPPVASPAPAPAKRGGAYYKD
DGPGDNPPDNLDAVPDAQPRLEPLHRFANRPYNVFGQDYVPATRLAPFRERGLASWYGRRFHGGNTSSGEPYDMYAMTAA
HPTLPIPSYARVTNVATGRSVVVRINDRGPFHKGRIMDLSYTAAYRLGYVNGGSAEVEVEQILPDEVPMEAMSPPVPPLP
GRRVPPALAAAAPDPAPATAAPASPSAGAVAFFLQLGAFASRDNAEGFRATVQRDLAAFAQRVDLLAEGGRFRLHAGPYA
SENEARVAAERIAATLKLKPFVVAR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=130, Percent_Identity=45.3846153846154, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 36639; Mature: 36508

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVPRPDLPAVMMMKSVPAAFTLRARPLTLVVASCCAAWLAGCSTAPVQESSAPGARPSP
CCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PPPVASPAPAPAKRGGAYYKDDGPGDNPPDNLDAVPDAQPRLEPLHRFANRPYNVFGQDY
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
VPATRLAPFRERGLASWYGRRFHGGNTSSGEPYDMYAMTAAHPTLPIPSYARVTNVATGR
CCHHHCCHHHHHCHHHHHHCEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCC
SVVVRINDRGPFHKGRIMDLSYTAAYRLGYVNGGSAEVEVEQILPDEVPMEAMSPPVPPL
EEEEEECCCCCCCCCEEEEEEHHEEEEEEEECCCCCEEEHHHHCCCCCCHHHCCCCCCCC
PGRRVPPALAAAAPDPAPATAAPASPSAGAVAFFLQLGAFASRDNAEGFRATVQRDLAAF
CCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AQRVDLLAEGGRFRLHAGPYASENEARVAAERIAATLKLKPFVVAR
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHEECCEEECC
>Mature Secondary Structure 
AVPRPDLPAVMMMKSVPAAFTLRARPLTLVVASCCAAWLAGCSTAPVQESSAPGARPSP
CCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PPPVASPAPAPAKRGGAYYKDDGPGDNPPDNLDAVPDAQPRLEPLHRFANRPYNVFGQDY
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
VPATRLAPFRERGLASWYGRRFHGGNTSSGEPYDMYAMTAAHPTLPIPSYARVTNVATGR
CCHHHCCHHHHHCHHHHHHCEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCC
SVVVRINDRGPFHKGRIMDLSYTAAYRLGYVNGGSAEVEVEQILPDEVPMEAMSPPVPPL
EEEEEECCCCCCCCCEEEEEEHHEEEEEEEECCCCCEEEHHHHCCCCCCHHHCCCCCCCC
PGRRVPPALAAAAPDPAPATAAPASPSAGAVAFFLQLGAFASRDNAEGFRATVQRDLAAF
CCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AQRVDLLAEGGRFRLHAGPYASENEARVAAERIAATLKLKPFVVAR
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]