| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is ycaO [H]
Identifier: 119896331
GI number: 119896331
Start: 43466
End: 45670
Strand: Direct
Name: ycaO [H]
Synonym: azo0039
Alternate gene names: 119896331
Gene position: 43466-45670 (Clockwise)
Preceding gene: 119896330
Following gene: 119896333
Centisome position: 0.99
GC content: 62.27
Gene sequence:
>2205_bases ATGGAAATCAAGGTTAATTTTCTCGACAAGCTTCGTCTCGAAGCCAAGTTCGATGACTTCACGGTAATCGCCGACCAGCC CATCCGCTACAAGGGCGACGGCTCGGCGCCGGGGCCGTTCGATTACTTTCTGGCGTCCTCCGCTTTGTGCGCGGCGTACT TCGTGAAGCTCTACTGCAACACGCGCAACATTCCCACCGACAACATCCGTCTGTCCCAGAACAACATCGTCGATCCGGAA AACCGCTATCAGCAGACCTTCAAGATCCAGGTCGAGCTGCCCGAGGACATCTCCGCCAAAGACCGCCTGGGCATCCTGCG CTCGATCGAACGTTGCACCGTGAAGAAGGTGGTGCAGACCGGGCCGGAGTTCGTGATCGAAGAGGTGGAAAACCTGGATG CCGATGCCCAGGCCCTGCTGACCCTGAGGCCGGACCCGGCCCACCGCACCTATATCGCGGGCAAGGATCTGCCCCTGGAG CAGACCATCGCCAATATGTCCGAGGTGCTCGCGGGCCTGGGCATCAAGATCGAGATCGCGTCGTGGCGCAATCTGGTTCC CAACGTGTGGTCGCTGCATATCCGCGATGCGCACTCGCCGATGTGTTTCACCAATGGCAAGGGGGCCAGCAAGGAAAGCG CCCTGGCCTCGGCGCTGGGCGAGTACATCGAGCGCCTGAACTGCAATCATTTCTACAACGACCAGTTCTGGGGAGAGGAC ATCGCCAACGCGCCCTTCGTCCACTACCCCGATGAACGCTGGTTCAAGCCGGGTCCGGCCGATGCGCTGCCGGCCGGGCT GCTGGACGACTACTGTCTGCAGATCTACAACCCCGACGGCGATCTGCGCGGCTCGCACCTGTACGACACCAATTCCGGCA ACGTCCGGCGCGGCATCTGCGCGCTGCCCTATGTGCGCCAGTCGGACGGCGCGGTGGTCTATTTCCCCTCCAACCTGATC GACAATCTGTTCCTCAGCAATGGCATGAGTGCCGGCAATACCCTGGCCGAGGCGCAGGTGCAATGCCTGTCCGAAATCTT CGAGCGGGCGGTGAAACGCGAAATCCTGGAAGGCGAGCTGGCGCTGCCGGATGTGCCGCCCGAGGTGCTGGCGAAATATC CGGGCATCCTGGCCGGCATCGAGGCGCTGGAGAAACAGGGCTTTCCGGTCCTGGTGAAAGATGCGTCGCTGGGTGGAACC TATCCGGTGATGTGCGTCACCCTGATGAACCCGCATACGGGCGGCGTGTTTGCCTCGTTCGGCGCCCATCCCAGCCTGGA GGTGGCGCTCGAACGCAGCCTGACCGAATTGCTGCAGGGTCGCAGTTTCGAAGGCCTCAACGATCTGCCCCGGCCGACCT TCAACAGCAACGCCGTGACCGAGCCGAACAACTTCGTCGAGCACTTCATCGACTCCAGCGGCGTGGTGTCGTGGCGCTTC TTCAGCGCCCGCGCCGATTTCGATTTTGTCGAATGGGACTTCTCCAGCCAGGGCCAGAACGCCAATGCCCAGGAAGCCGC GCGGCTGTTGGGCATTCTCGAAGACATGGGCAAGGAGGTGTACATGGCGGTGTATGACCAGCTCGGTGCCATCGCCTGCC GCATCCTGGTGCCGGATTATTCCGAGATCTATCCGGTGGAAGACCTGATCTGGGACAACACCAACAAGGCGCTGGCGTTC CGCGCCGACATCCTGAACCTGCACCGGCTCGACGACGCGGGCCTGGAAGCCCTGCTTGAACGCCTGGAAGACAGCGAACT CGACGACTACACCGACATCATCACCCTGATCGGGATCGAGTTCGACGAGAACACCGTCTGGGGTCAGCTGACGATCCTGG AGCTAAAGCTGCTGATCCATCTGGCCCTGCAGCAATTCGAGGCGGCAAAGGAGAGGGTGGAGGCCTTCCTGCAGTACAAC GAGAACACGGTCGAGCGCGTCCTGTTCTACCAGGCGCTGGATGCGGTGCTGGAGGTGGTGCTGGACGACGCGCTGGAACT GGACGACTACGTCGTCAATTTCCGCCGGATGTTCGGCGACGCGCGCATGGATGCGGTACTCGGCTCGGTGGACGGCAGCG TCCGCTTCTTCGGCCTGACCCCGACCAGCATGAAACTGGAAGGGCTCGACCGCCACCAGCGCCTGATCGACAGTTACCGC AAGCTGCACACCGCGCGGGCCCGGCGGGCGTCCGCCCCCGCTTGA
Upstream 100 bases:
>100_bases TTTCGACCGCGGCCGGCGCGCACACCGCCGGTCGGCGATCACGGCGCGAAACAACGATAATGGCGCCCACTCGTTTTGAA CACGGCGCCGGAATTACCCC
Downstream 100 bases:
>100_bases GCGTCGGGCGGGCACCCGCCCGCCCCGCGCTCAGCCCCGGTAGCCCTTCGGGCTCACGCCCGTCATCCGCCTGAACGTCG CCGAAAAGTGGCTCAGGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCNTRNIPTDNIRLSQNNIVDPE NRYQQTFKIQVELPEDISAKDRLGILRSIERCTVKKVVQTGPEFVIEEVENLDADAQALLTLRPDPAHRTYIAGKDLPLE QTIANMSEVLAGLGIKIEIASWRNLVPNVWSLHIRDAHSPMCFTNGKGASKESALASALGEYIERLNCNHFYNDQFWGED IANAPFVHYPDERWFKPGPADALPAGLLDDYCLQIYNPDGDLRGSHLYDTNSGNVRRGICALPYVRQSDGAVVYFPSNLI DNLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGELALPDVPPEVLAKYPGILAGIEALEKQGFPVLVKDASLGGT YPVMCVTLMNPHTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDLPRPTFNSNAVTEPNNFVEHFIDSSGVVSWRF FSARADFDFVEWDFSSQGQNANAQEAARLLGILEDMGKEVYMAVYDQLGAIACRILVPDYSEIYPVEDLIWDNTNKALAF RADILNLHRLDDAGLEALLERLEDSELDDYTDIITLIGIEFDENTVWGQLTILELKLLIHLALQQFEAAKERVEAFLQYN ENTVERVLFYQALDAVLEVVLDDALELDDYVVNFRRMFGDARMDAVLGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYR KLHTARARRASAPA
Sequences:
>Translated_734_residues MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCNTRNIPTDNIRLSQNNIVDPE NRYQQTFKIQVELPEDISAKDRLGILRSIERCTVKKVVQTGPEFVIEEVENLDADAQALLTLRPDPAHRTYIAGKDLPLE QTIANMSEVLAGLGIKIEIASWRNLVPNVWSLHIRDAHSPMCFTNGKGASKESALASALGEYIERLNCNHFYNDQFWGED IANAPFVHYPDERWFKPGPADALPAGLLDDYCLQIYNPDGDLRGSHLYDTNSGNVRRGICALPYVRQSDGAVVYFPSNLI DNLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGELALPDVPPEVLAKYPGILAGIEALEKQGFPVLVKDASLGGT YPVMCVTLMNPHTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDLPRPTFNSNAVTEPNNFVEHFIDSSGVVSWRF FSARADFDFVEWDFSSQGQNANAQEAARLLGILEDMGKEVYMAVYDQLGAIACRILVPDYSEIYPVEDLIWDNTNKALAF RADILNLHRLDDAGLEALLERLEDSELDDYTDIITLIGIEFDENTVWGQLTILELKLLIHLALQQFEAAKERVEAFLQYN ENTVERVLFYQALDAVLEVVLDDALELDDYVVNFRRMFGDARMDAVLGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYR KLHTARARRASAPA >Mature_734_residues MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCNTRNIPTDNIRLSQNNIVDPE NRYQQTFKIQVELPEDISAKDRLGILRSIERCTVKKVVQTGPEFVIEEVENLDADAQALLTLRPDPAHRTYIAGKDLPLE QTIANMSEVLAGLGIKIEIASWRNLVPNVWSLHIRDAHSPMCFTNGKGASKESALASALGEYIERLNCNHFYNDQFWGED IANAPFVHYPDERWFKPGPADALPAGLLDDYCLQIYNPDGDLRGSHLYDTNSGNVRRGICALPYVRQSDGAVVYFPSNLI DNLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGELALPDVPPEVLAKYPGILAGIEALEKQGFPVLVKDASLGGT YPVMCVTLMNPHTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDLPRPTFNSNAVTEPNNFVEHFIDSSGVVSWRF FSARADFDFVEWDFSSQGQNANAQEAARLLGILEDMGKEVYMAVYDQLGAIACRILVPDYSEIYPVEDLIWDNTNKALAF RADILNLHRLDDAGLEALLERLEDSELDDYTDIITLIGIEFDENTVWGQLTILELKLLIHLALQQFEAAKERVEAFLQYN ENTVERVLFYQALDAVLEVVLDDALELDDYVVNFRRMFGDARMDAVLGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYR KLHTARARRASAPA
Specific function: Unknown
COG id: COG1944
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0142 family [H]
Homologues:
Organism=Escherichia coli, GI87081799, Length=583, Percent_Identity=46.3121783876501, Blast_Score=520, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003776 [H]
Pfam domain/function: PF02624 YcaO [H]
EC number: NA
Molecular weight: Translated: 82109; Mature: 82109
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN CEEEEEHHHHHHHEECCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC TRNIPTDNIRLSQNNIVDPENRYQQTFKIQVELPEDISAKDRLGILRSIERCTVKKVVQT CCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC GPEFVIEEVENLDADAQALLTLRPDPAHRTYIAGKDLPLEQTIANMSEVLAGLGIKIEIA CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEC SWRNLVPNVWSLHIRDAHSPMCFTNGKGASKESALASALGEYIERLNCNHFYNDQFWGED CHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH IANAPFVHYPDERWFKPGPADALPAGLLDDYCLQIYNPDGDLRGSHLYDTNSGNVRRGIC HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCEE ALPYVRQSDGAVVYFPSNLIDNLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEL ECCCEECCCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC ALPDVPPEVLAKYPGILAGIEALEKQGFPVLVKDASLGGTYPVMCVTLMNPHTGGVFASF CCCCCCHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEC GAHPSLEVALERSLTELLQGRSFEGLNDLPRPTFNSNAVTEPNNFVEHFIDSSGVVSWRF CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEE FSARADFDFVEWDFSSQGQNANAQEAARLLGILEDMGKEVYMAVYDQLGAIACRILVPDY EECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC SEIYPVEDLIWDNTNKALAFRADILNLHRLDDAGLEALLERLEDSELDDYTDIITLIGIE HHHCCHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHEEEE FDENTVWGQLTILELKLLIHLALQQFEAAKERVEAFLQYNENTVERVLFYQALDAVLEVV ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LDDALELDDYVVNFRRMFGDARMDAVLGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYR HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCEECCCHHHHHHHHHHH KLHTARARRASAPA HHHHHHHHHCCCCC >Mature Secondary Structure MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN CEEEEEHHHHHHHEECCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC TRNIPTDNIRLSQNNIVDPENRYQQTFKIQVELPEDISAKDRLGILRSIERCTVKKVVQT CCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC GPEFVIEEVENLDADAQALLTLRPDPAHRTYIAGKDLPLEQTIANMSEVLAGLGIKIEIA CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEC SWRNLVPNVWSLHIRDAHSPMCFTNGKGASKESALASALGEYIERLNCNHFYNDQFWGED CHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH IANAPFVHYPDERWFKPGPADALPAGLLDDYCLQIYNPDGDLRGSHLYDTNSGNVRRGIC HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCEE ALPYVRQSDGAVVYFPSNLIDNLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEL ECCCEECCCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC ALPDVPPEVLAKYPGILAGIEALEKQGFPVLVKDASLGGTYPVMCVTLMNPHTGGVFASF CCCCCCHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEC GAHPSLEVALERSLTELLQGRSFEGLNDLPRPTFNSNAVTEPNNFVEHFIDSSGVVSWRF CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEE FSARADFDFVEWDFSSQGQNANAQEAARLLGILEDMGKEVYMAVYDQLGAIACRILVPDY EECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC SEIYPVEDLIWDNTNKALAFRADILNLHRLDDAGLEALLERLEDSELDDYTDIITLIGIE HHHCCHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHEEEE FDENTVWGQLTILELKLLIHLALQQFEAAKERVEAFLQYNENTVERVLFYQALDAVLEVV ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LDDALELDDYVVNFRRMFGDARMDAVLGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYR HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCEECCCHHHHHHHHHHH KLHTARARRASAPA HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]