| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is linC [H]
Identifier: 119896333
GI number: 119896333
Start: 46800
End: 47561
Strand: Direct
Name: linC [H]
Synonym: azo0041
Alternate gene names: 119896333
Gene position: 46800-47561 (Clockwise)
Preceding gene: 119896331
Following gene: 119896334
Centisome position: 1.07
GC content: 70.08
Gene sequence:
>762_bases ATGCAGGGCATGCTCGAACAGAAGGTGGTGATCGTCACCGGCGCCGGCTCCGGCATCGGCCGCGCGGCGGCCGAGCTGAT GGCGCGCGAAGGCGCGATCGTGATCGCCAGCGATCTCAAGCTGGATACGGTGGAAGACACCGCGCACCGCATCACCCTGG CCGGTGGCCGCGCGGTGGCGGTGCGCACCGACGTGGCGAAGCTGGCCGAGCTGGACGCGCTGCACGACCTCGCCATCGCC GAATTCGGCCGGCTGGACGGCGCCTTCAACAACGCCGGCATTCCGGGGCCGGGCGTGGCGCTCGCCGATCACGAGGAAGC CGCCTTCGACGCGCTGATCGCGATCAACCTGAAGGCGGTGTGGTACGGCATGAAGCGCCAGATCGAGTTGATGCTGCCGG GCGGCGGCGGCGCCATCGTCAATACCGCCTCGGTCGGCGGCATCGTCGGCAAGCCGGGGCTGTCGGTCTATTGCGCCACC AAACATGCGGTGATCGGCCTCACCAAGACGGCCGCGCTGGAATACGGCAGCCGCGGCGTGCGGGTGAATGCGGTGTGCCC CGGGGTGATCCGCACGCCGATGGTGGACCAGGTGATCGCCGGCCAGCCGGGGGCGGAGGAGGAATGGAACAGGCTGCAGC CGATCGGCCGCATGGGCACGCCGGAGGAACTGGCCGAAACGGTGGTGTGGCTGATGTCGCCGCGGGCCTCGCTGGTGCAT GGCCACGCGCTGGTGGCCGACGGCGGACTGACGGTGGCGTAA
Upstream 100 bases:
>100_bases CGCTAAAGTTATCCGCCGCCGGCGCCCGCGCCGCGCCGCCCGGCTACAGTGCGCAGCACCACAAGCCCCCGCGCGGGCCG CACAAGGACAGGAGACACAG
Downstream 100 bases:
>100_bases GCGTCTGGATCGGACGGAGGTCGACACCCGGGTATCGCGCGCATCGCACCCGGGGATGGCCGGCTGTCTTCAATGGTGAT CAGGGGTCTGGTGCCCCCTC
Product: short-chain dehydrogenase family protein
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MQGMLEQKVVIVTGAGSGIGRAAAELMAREGAIVIASDLKLDTVEDTAHRITLAGGRAVAVRTDVAKLAELDALHDLAIA EFGRLDGAFNNAGIPGPGVALADHEEAAFDALIAINLKAVWYGMKRQIELMLPGGGGAIVNTASVGGIVGKPGLSVYCAT KHAVIGLTKTAALEYGSRGVRVNAVCPGVIRTPMVDQVIAGQPGAEEEWNRLQPIGRMGTPEELAETVVWLMSPRASLVH GHALVADGGLTVA
Sequences:
>Translated_253_residues MQGMLEQKVVIVTGAGSGIGRAAAELMAREGAIVIASDLKLDTVEDTAHRITLAGGRAVAVRTDVAKLAELDALHDLAIA EFGRLDGAFNNAGIPGPGVALADHEEAAFDALIAINLKAVWYGMKRQIELMLPGGGGAIVNTASVGGIVGKPGLSVYCAT KHAVIGLTKTAALEYGSRGVRVNAVCPGVIRTPMVDQVIAGQPGAEEEWNRLQPIGRMGTPEELAETVVWLMSPRASLVH GHALVADGGLTVA >Mature_253_residues MQGMLEQKVVIVTGAGSGIGRAAAELMAREGAIVIASDLKLDTVEDTAHRITLAGGRAVAVRTDVAKLAELDALHDLAIA EFGRLDGAFNNAGIPGPGVALADHEEAAFDALIAINLKAVWYGMKRQIELMLPGGGGAIVNTASVGGIVGKPGLSVYCAT KHAVIGLTKTAALEYGSRGVRVNAVCPGVIRTPMVDQVIAGQPGAEEEWNRLQPIGRMGTPEELAETVVWLMSPRASLVH GHALVADGGLTVA
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=36.4705882352941, Blast_Score=122, Evalue=2e-28, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=33.976833976834, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=33.739837398374, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=31.8367346938775, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=30.1158301158301, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=30.2788844621514, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=33.8383838383838, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=32.4, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.241935483871, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI59889578, Length=195, Percent_Identity=33.8461538461538, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=32.0158102766798, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI40807363, Length=201, Percent_Identity=29.3532338308458, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=31.25, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=32.9411764705882, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.3867403314917, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=29.2553191489362, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=28.6259541984733, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI142976729, Length=213, Percent_Identity=27.6995305164319, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7706318, Length=204, Percent_Identity=28.4313725490196, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI310128830, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310115468, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=37.7431906614786, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=33.8775510204082, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.1138211382114, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=32.9268292682927, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=33.6032388663968, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=34.9019607843137, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.1497975708502, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=33.6065573770492, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=27.5, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=32.3529411764706, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=30.5555555555556, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=32.6612903225806, Blast_Score=79, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=37.4015748031496, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.1285140562249, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=34.9206349206349, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=32.6848249027237, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=32.183908045977, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=32.6771653543307, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=32.9501915708812, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=33.852140077821, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=32.5670498084291, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=31.9066147859922, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=31.1284046692607, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.3893129770992, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=32.3420074349442, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=27.5303643724696, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17564282, Length=202, Percent_Identity=34.1584158415842, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=32.3076923076923, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=34.3511450381679, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=31.2820512820513, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI193203115, Length=234, Percent_Identity=29.9145299145299, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193203117, Length=234, Percent_Identity=29.9145299145299, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.5171102661597, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=31.0606060606061, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=29.4776119402985, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.1187739463602, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538480, Length=275, Percent_Identity=28, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.0898876404494, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115534694, Length=260, Percent_Identity=30, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=27.0676691729323, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=29.8039215686275, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17555612, Length=214, Percent_Identity=27.5700934579439, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=212, Percent_Identity=33.0188679245283, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=27.5590551181102, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=37.0517928286853, Blast_Score=137, Evalue=5e-33, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=38.4920634920635, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=31.4285714285714, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=34.2629482071713, Blast_Score=113, Evalue=9e-26, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=34.8837209302326, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24643142, Length=260, Percent_Identity=33.0769230769231, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=31.1538461538462, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=36.2549800796813, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=30.1587301587302, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=34.020618556701, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=29.5238095238095, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221510726, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281364892, Length=164, Percent_Identity=31.7073170731707, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007236, Length=213, Percent_Identity=28.169014084507, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=26.4550264550265, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24641232, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI21358495, Length=247, Percent_Identity=25.9109311740891, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26081; Mature: 26081
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGMLEQKVVIVTGAGSGIGRAAAELMAREGAIVIASDLKLDTVEDTAHRITLAGGRAVA CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCEEECCCCCCEEEEEECCEEEE VRTDVAKLAELDALHDLAIAEFGRLDGAFNNAGIPGPGVALADHEEAAFDALIAINLKAV EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHEEEEEEEHHHE WYGMKRQIELMLPGGGGAIVNTASVGGIVGKPGLSVYCATKHAVIGLTKTAALEYGSRGV EECCCEEEEEEEECCCCEEEEECCCCCEECCCCCEEEEECCCEEEEEEHHHHHHCCCCCE RVNAVCPGVIRTPMVDQVIAGQPGAEEEWNRLQPIGRMGTPEELAETVVWLMSPRASLVH EEEEECCCHHCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHEE GHALVADGGLTVA CEEEEECCCEEEC >Mature Secondary Structure MQGMLEQKVVIVTGAGSGIGRAAAELMAREGAIVIASDLKLDTVEDTAHRITLAGGRAVA CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCEEECCCCCCEEEEEECCEEEE VRTDVAKLAELDALHDLAIAEFGRLDGAFNNAGIPGPGVALADHEEAAFDALIAINLKAV EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHEEEEEEEHHHE WYGMKRQIELMLPGGGGAIVNTASVGGIVGKPGLSVYCATKHAVIGLTKTAALEYGSRGV EECCCEEEEEEEECCCCEEEEECCCCCEECCCCCEEEEECCCEEEEEEHHHHHHCCCCCE RVNAVCPGVIRTPMVDQVIAGQPGAEEEWNRLQPIGRMGTPEELAETVVWLMSPRASLVH EEEEECCCHHCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHEE GHALVADGGLTVA CEEEEECCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]