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The map label for this gene is rdgC [H]

Identifier: 162139900

GI number: 162139900

Start: 1298478

End: 1299389

Strand: Reverse

Name: rdgC [H]

Synonym: Sama_1072

Alternate gene names: 162139900

Gene position: 1299389-1298478 (Counterclockwise)

Preceding gene: 119774214

Following gene: 119774208

Centisome position: 30.18

GC content: 53.84

Gene sequence:

>912_bases
ATGTGGTTTAAAAATCTCACCCTGTATCGCTTCAACAAGCCTGTCACCATAGACGCAGATTCACTGGAAAAGGCCCTGGC
CGATTTCTCCTTCAGCCCTTGTTCCAGCCAGGACGTCAGTAAGTTCGGGTTTTCAAAGGCGCTTGGTAAACACGGCAGCG
CACTGGTGCACAGCGCCAACAACCGCCATTTGATCTGCGCCACCAAGGAAGAAAAAATTCTGCCCGGCCAGGTCATTAAA
GAAGCGCTGGAAGAAAAGGTGGGACAGCTTGAAGATGAAGAAAACCGCAAGCTGACCAAGAAAGAAAAAGATGCGTTAAA
AGACGAAATCACCACCAGCTTGCTGCCACGGGCGTTTTCCCGTCGCAGTCAGATCCATGCTCTGATTTTGCCTGAAATTG
ATATGATCCTGGTGGACAGCTCCAGCGCCACCAAGGCCGAAGAGCTGCTGGCGTTGCTGCGTAAAGCCATGGGCTCATTG
CCTGTGATACCTGTGTCTTTCAATGTCCCGGTTGAGCACACTATGACCGAATGGCTCAAGGCTGGTGAAGCCAGTGCGCC
CTTTATCATGCAGGATGAGGCAGAGCTTAAATCGGCCGCCGAAGAAGGCGGTATTGTGCGCTTCAAGCAGCAGGTTCTCA
CCGAAGACGAAGTGCTGGCCCATCTGGAAACCGGCAAAGAAGTACACAAGCTGGCGCTGCATTTTGGTCAGTCCATCGCG
CTCCTGCTCCAGTCCGATGCCAGTCTCAAACGCCTCAAATTCTCTGAGGAATTCCGTGCAGGCAATGACGATTTGGGCAA
CGATGACCCCATGGCCCGCCTCGATGCCGATTTTGCCCTCATGGGCAGCGAGTTGGTCGCCCTGATGCACGCACTGGTCG
AGGCACTGGGCGGACTGCCCAAAGACGAGTAA

Upstream 100 bases:

>100_bases
GAATTTGCAAAACCGCAATCTGACTGTCATGAATTTTCTGGTTTGCCCGCTTACCGGAGATGGCTTACACTCGGTCTTTT
GTTTCTGGCCGAGTGCAATT

Downstream 100 bases:

>100_bases
CCCCGTGCAATAAAAACAGGGCGCCGAAGCGCCCTGTTTTTTTATCTGTCCTGTTTTTTTCTACCCATCCTGTACCTTCA
TTTCCCGCTCCGGCACTGCC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MWFKNLTLYRFNKPVTIDADSLEKALADFSFSPCSSQDVSKFGFSKALGKHGSALVHSANNRHLICATKEEKILPGQVIK
EALEEKVGQLEDEENRKLTKKEKDALKDEITTSLLPRAFSRRSQIHALILPEIDMILVDSSSATKAEELLALLRKAMGSL
PVIPVSFNVPVEHTMTEWLKAGEASAPFIMQDEAELKSAAEEGGIVRFKQQVLTEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASLKRLKFSEEFRAGNDDLGNDDPMARLDADFALMGSELVALMHALVEALGGLPKDE

Sequences:

>Translated_303_residues
MWFKNLTLYRFNKPVTIDADSLEKALADFSFSPCSSQDVSKFGFSKALGKHGSALVHSANNRHLICATKEEKILPGQVIK
EALEEKVGQLEDEENRKLTKKEKDALKDEITTSLLPRAFSRRSQIHALILPEIDMILVDSSSATKAEELLALLRKAMGSL
PVIPVSFNVPVEHTMTEWLKAGEASAPFIMQDEAELKSAAEEGGIVRFKQQVLTEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASLKRLKFSEEFRAGNDDLGNDDPMARLDADFALMGSELVALMHALVEALGGLPKDE
>Mature_303_residues
MWFKNLTLYRFNKPVTIDADSLEKALADFSFSPCSSQDVSKFGFSKALGKHGSALVHSANNRHLICATKEEKILPGQVIK
EALEEKVGQLEDEENRKLTKKEKDALKDEITTSLLPRAFSRRSQIHALILPEIDMILVDSSSATKAEELLALLRKAMGSL
PVIPVSFNVPVEHTMTEWLKAGEASAPFIMQDEAELKSAAEEGGIVRFKQQVLTEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASLKRLKFSEEFRAGNDDLGNDDPMARLDADFALMGSELVALMHALVEALGGLPKDE

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=298, Percent_Identity=52.3489932885906, Blast_Score=316, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 33421; Mature: 33421

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNLTLYRFNKPVTIDADSLEKALADFSFSPCSSQDVSKFGFSKALGKHGSALVHSAN
CCCCCEEEEEECCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCC
NRHLICATKEEKILPGQVIKEALEEKVGQLEDEENRKLTKKEKDALKDEITTSLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQIHALILPEIDMILVDSSSATKAEELLALLRKAMGSLPVIPVSFNVPVEHTMTEWLK
HHHHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
AGEASAPFIMQDEAELKSAAEEGGIVRFKQQVLTEDEVLAHLETGKEVHKLALHFGQSIA
CCCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHH
LLLQSDASLKRLKFSEEFRAGNDDLGNDDPMARLDADFALMGSELVALMHALVEALGGLP
HHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
KDE
CCC
>Mature Secondary Structure
MWFKNLTLYRFNKPVTIDADSLEKALADFSFSPCSSQDVSKFGFSKALGKHGSALVHSAN
CCCCCEEEEEECCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCC
NRHLICATKEEKILPGQVIKEALEEKVGQLEDEENRKLTKKEKDALKDEITTSLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQIHALILPEIDMILVDSSSATKAEELLALLRKAMGSLPVIPVSFNVPVEHTMTEWLK
HHHHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
AGEASAPFIMQDEAELKSAAEEGGIVRFKQQVLTEDEVLAHLETGKEVHKLALHFGQSIA
CCCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCHHH
LLLQSDASLKRLKFSEEFRAGNDDLGNDDPMARLDADFALMGSELVALMHALVEALGGLP
HHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
KDE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA