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The map label for this gene is 119774214

Identifier: 119774214

GI number: 119774214

Start: 1304198

End: 1305103

Strand: Reverse

Name: 119774214

Synonym: Sama_1077

Alternate gene names: NA

Gene position: 1305103-1304198 (Counterclockwise)

Preceding gene: 119774217

Following gene: 162139900

Centisome position: 30.31

GC content: 53.97

Gene sequence:

>906_bases
ATGCGCCTGTCACTCCTGTTCTTAAGCCTACTGTCGGCTGTATGCCATGCCCAAATCCAGCCCGCCGTGGATGCCGTACT
GACCATAACCCACCAGTGCAGCCCTACCCTGATTATTCGCGCCCAGGCGCTCGCGCAATCACAAATAGACGAAGCCTGTA
CCCTGTTAAGTACTCAGGAAAAGAGGTTTCATACACTCCTCGATACTCACAACAGACCGGTGCGGGACGACAACAATGTG
GCCATGAGAGCCAACATCTATGCCAACGCAGACGCCTACCGCACCTATGTCACCGCCCACTTCGATGTGCCCAGTGACAA
TGGCGGCATGTATCTGGAAGGACATCCGGAACATCCCGGTAATCAGGCCGAGTTTGTGGCCTATCAAAAACAGGGAAAAA
TCTGGAATCTGCGCCATGAGTATGTGCACTATCTCGATGGCCGCTTTAACCTCTATGGCGACTTTTGCGCCTCATTGCAC
GACTCCCACAGCGCCCCCGAGTATTGCCCCAAGCCTGCGCCTTTGCTGCCTCATCTGGTGTGGTGGTCTGAGGGTCTTGC
CGAGTATCTGGCCTGGGGGGATGACAATCCAGCGGCCATTGAACTGGCCGCAAAGGGCAGCTATCGCCTCAGTGAAATTT
TTGACACCAGTTATGAGCAAAACGGTGGCAGTGAACGGATTTACCGCTGGGGCTATCTGGCGGTGCGATTTATGATGGAG
CACCACAGAGACAAGCTGGAACAGATGCTCGGCTTTACCCGCAACGGCGATTACCCCCGCTATCAGGCGTTGGTGCGAGA
GTGGCATACCAGCATGGATGGGGAGTTTTCGCTGTGGTTGAAAAAAATTTCAAAAAAATTGCCAATGGCGGGAACCAATC
CCCAGATGGCCGGTCTGAATAATTGA

Upstream 100 bases:

>100_bases
CCAAGCGCTCCAACCAAGGGGCCTGTCGCTGAAAGATTGACAACACCTGTAAATCAATCGATATTGCATACAATATTCAC
AAATAATACAGAGAAATTGA

Downstream 100 bases:

>100_bases
ACCGAGTTATTCATCGTTCATCATCCTCCCTTTTTGATGGTTTCTAGCGCGACCATCCTTAGTTTGGAAAGACACTTGTT
CGGCTCCCATTGGGAGCCGT

Product: collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRLSLLFLSLLSAVCHAQIQPAVDAVLTITHQCSPTLIIRAQALAQSQIDEACTLLSTQEKRFHTLLDTHNRPVRDDNNV
AMRANIYANADAYRTYVTAHFDVPSDNGGMYLEGHPEHPGNQAEFVAYQKQGKIWNLRHEYVHYLDGRFNLYGDFCASLH
DSHSAPEYCPKPAPLLPHLVWWSEGLAEYLAWGDDNPAAIELAAKGSYRLSEIFDTSYEQNGGSERIYRWGYLAVRFMME
HHRDKLEQMLGFTRNGDYPRYQALVREWHTSMDGEFSLWLKKISKKLPMAGTNPQMAGLNN

Sequences:

>Translated_301_residues
MRLSLLFLSLLSAVCHAQIQPAVDAVLTITHQCSPTLIIRAQALAQSQIDEACTLLSTQEKRFHTLLDTHNRPVRDDNNV
AMRANIYANADAYRTYVTAHFDVPSDNGGMYLEGHPEHPGNQAEFVAYQKQGKIWNLRHEYVHYLDGRFNLYGDFCASLH
DSHSAPEYCPKPAPLLPHLVWWSEGLAEYLAWGDDNPAAIELAAKGSYRLSEIFDTSYEQNGGSERIYRWGYLAVRFMME
HHRDKLEQMLGFTRNGDYPRYQALVREWHTSMDGEFSLWLKKISKKLPMAGTNPQMAGLNN
>Mature_301_residues
MRLSLLFLSLLSAVCHAQIQPAVDAVLTITHQCSPTLIIRAQALAQSQIDEACTLLSTQEKRFHTLLDTHNRPVRDDNNV
AMRANIYANADAYRTYVTAHFDVPSDNGGMYLEGHPEHPGNQAEFVAYQKQGKIWNLRHEYVHYLDGRFNLYGDFCASLH
DSHSAPEYCPKPAPLLPHLVWWSEGLAEYLAWGDDNPAAIELAAKGSYRLSEIFDTSYEQNGGSERIYRWGYLAVRFMME
HHRDKLEQMLGFTRNGDYPRYQALVREWHTSMDGEFSLWLKKISKKLPMAGTNPQMAGLNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PKD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013510
- InterPro:   IPR002169
- InterPro:   IPR013661
- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD [H]

EC number: =3.4.24.3 [H]

Molecular weight: Translated: 34347; Mature: 34347

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSLLFLSLLSAVCHAQIQPAVDAVLTITHQCSPTLIIRAQALAQSQIDEACTLLSTQE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
KRFHTLLDTHNRPVRDDNNVAMRANIYANADAYRTYVTAHFDVPSDNGGMYLEGHPEHPG
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEECCCCCCC
NQAEFVAYQKQGKIWNLRHEYVHYLDGRFNLYGDFCASLHDSHSAPEYCPKPAPLLPHLV
CCCEEEEEECCCCEECHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
WWSEGLAEYLAWGDDNPAAIELAAKGSYRLSEIFDTSYEQNGGSERIYRWGYLAVRFMME
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
HHRDKLEQMLGFTRNGDYPRYQALVREWHTSMDGEFSLWLKKISKKLPMAGTNPQMAGLN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
N
C
>Mature Secondary Structure
MRLSLLFLSLLSAVCHAQIQPAVDAVLTITHQCSPTLIIRAQALAQSQIDEACTLLSTQE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
KRFHTLLDTHNRPVRDDNNVAMRANIYANADAYRTYVTAHFDVPSDNGGMYLEGHPEHPG
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEECCCCCCC
NQAEFVAYQKQGKIWNLRHEYVHYLDGRFNLYGDFCASLHDSHSAPEYCPKPAPLLPHLV
CCCEEEEEECCCCEECHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
WWSEGLAEYLAWGDDNPAAIELAAKGSYRLSEIFDTSYEQNGGSERIYRWGYLAVRFMME
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
HHRDKLEQMLGFTRNGDYPRYQALVREWHTSMDGEFSLWLKKISKKLPMAGTNPQMAGLN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1311172 [H]