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The map label for this gene is rpfG [H]

Identifier: 119774208

GI number: 119774208

Start: 1296772

End: 1297956

Strand: Reverse

Name: rpfG [H]

Synonym: Sama_1071

Alternate gene names: 119774208

Gene position: 1297956-1296772 (Counterclockwise)

Preceding gene: 162139900

Following gene: 119774204

Centisome position: 30.14

GC content: 52.41

Gene sequence:

>1185_bases
ATGTCCAAACTTTCACGGGATGAATACCCAACGGACCTCGCCCATTGGCGTCAGATTATCTTCCGTCGTCTGTTCGGAGC
CATGGCCATCATATGTGTGCCTGTTTATATCACCAGCGTGTATTTGTGTGTAAAACAGGGCCTCTGGTCCATGGTGGTGG
TAGATACCCTCGCGTATCTGGTGCTCATTGCAATGCTGTTGTTTCCAGAGCTGGAGGATAAGCAGCGCTATCTGATGGGC
AGCCTGCTGTGCTATGGCATAGGGGTAGCCTTTATCTGGTCTATAGGTCCCACAGGGGCAGGCTTTTTTTGGCTGTTTAT
GTTTCCCCTGATAGGGACACTGCTGCTTGGGCGGCGATTCGGTATTTATTGTCTGATGCTAACCGCTCTTACCCTCATCA
TCATGGGACTGGGTTTTACGGCCCAATGGGTACCCTGGCCGGAATTGCCCGACTACAGCCTGGAAATTTATCTGGTAGTA
GTACTTAACTTTTTGACTATTAACGTGATGTTATGCCTGGCGACAGGTTTCCTCACTGACAAACTCTCTGACTCCCTTGA
GCGAACACATGCGTCACGCAGGGCAACCGTACTGGGTCTTGCCCGGCTTTCCGGCTTTAAGGATGCCGATTCAGCCAGAC
ACCTGAACCGTATCGCCAAAGCCAGCGAGCTATTAACCCAGGCCCTGTTGAGCTCACCCCATCGCCCTGACGAATTGACT
CCGGAATTTGCGGAAAATATTGGTCTCAGCGCCACCTTGCATGACATAGGCATGATAGGTGTAGCCGATAACCTGCAAAG
CAAACAACTCACCATGACGCCAGACATGGAAAGCGAACGCTATAAACACACCCTTATCGGTGATCGCTTGCTCGGCGAGC
TGTTACGTGAAGCACCGGACTGTGTACTGCTGGCCATGGCAAGAGACATTGCCGCCTACCACCATGAGCGCTGGGATGGA
GAAGGCTTCCCCGGCAAGCTCAAGGGGAAATCCATTCCCCTTGCGGCACGGGTTGTGGCACTGATAGACACTGTGGATGA
CTTGCTTTGTCATCCTGACCCCAGATTCCGGATGACTTATGAACAGGCCCGCACCCACATTAAAGGGCTCAAGGGCAGTA
TTCTCGACCCCTTGCTGGTGGATACCTTTCTCAGTGAGCCTGCCATGCGAGAAATATGGCACTGA

Upstream 100 bases:

>100_bases
ACTGTTGTAAAGCTTGAAATCACTTGCAACTCTGCTAAAAACAGGGATATTAACCTTTTCCTGTTATACAGATAGCCTCG
AAGGCATAGGTTGAGACTGC

Downstream 100 bases:

>100_bases
CGCACACATAAACCATTGAACTCAGTCGGCCAGGATCCAAATGGGCTCATCCGAGCCTCTGGACTTTTGTGATACGCCTT
CGATACGACTTAGGGATATT

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSKLSRDEYPTDLAHWRQIIFRRLFGAMAIICVPVYITSVYLCVKQGLWSMVVVDTLAYLVLIAMLLFPELEDKQRYLMG
SLLCYGIGVAFIWSIGPTGAGFFWLFMFPLIGTLLLGRRFGIYCLMLTALTLIIMGLGFTAQWVPWPELPDYSLEIYLVV
VLNFLTINVMLCLATGFLTDKLSDSLERTHASRRATVLGLARLSGFKDADSARHLNRIAKASELLTQALLSSPHRPDELT
PEFAENIGLSATLHDIGMIGVADNLQSKQLTMTPDMESERYKHTLIGDRLLGELLREAPDCVLLAMARDIAAYHHERWDG
EGFPGKLKGKSIPLAARVVALIDTVDDLLCHPDPRFRMTYEQARTHIKGLKGSILDPLLVDTFLSEPAMREIWH

Sequences:

>Translated_394_residues
MSKLSRDEYPTDLAHWRQIIFRRLFGAMAIICVPVYITSVYLCVKQGLWSMVVVDTLAYLVLIAMLLFPELEDKQRYLMG
SLLCYGIGVAFIWSIGPTGAGFFWLFMFPLIGTLLLGRRFGIYCLMLTALTLIIMGLGFTAQWVPWPELPDYSLEIYLVV
VLNFLTINVMLCLATGFLTDKLSDSLERTHASRRATVLGLARLSGFKDADSARHLNRIAKASELLTQALLSSPHRPDELT
PEFAENIGLSATLHDIGMIGVADNLQSKQLTMTPDMESERYKHTLIGDRLLGELLREAPDCVLLAMARDIAAYHHERWDG
EGFPGKLKGKSIPLAARVVALIDTVDDLLCHPDPRFRMTYEQARTHIKGLKGSILDPLLVDTFLSEPAMREIWH
>Mature_393_residues
SKLSRDEYPTDLAHWRQIIFRRLFGAMAIICVPVYITSVYLCVKQGLWSMVVVDTLAYLVLIAMLLFPELEDKQRYLMGS
LLCYGIGVAFIWSIGPTGAGFFWLFMFPLIGTLLLGRRFGIYCLMLTALTLIIMGLGFTAQWVPWPELPDYSLEIYLVVV
LNFLTINVMLCLATGFLTDKLSDSLERTHASRRATVLGLARLSGFKDADSARHLNRIAKASELLTQALLSSPHRPDELTP
EFAENIGLSATLHDIGMIGVADNLQSKQLTMTPDMESERYKHTLIGDRLLGELLREAPDCVLLAMARDIAAYHHERWDGE
GFPGKLKGKSIPLAARVVALIDTVDDLLCHPDPRFRMTYEQARTHIKGLKGSILDPLLVDTFLSEPAMREIWH

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44287; Mature: 44156

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
SKLSRDEYPTDLAHWRQIIFRRLFGAMAIICVPVYITSVYLCVKQGLWSMVVVDTLAYL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIAMLLFPELEDKQRYLMGSLLCYGIGVAFIWSIGPTGAGFFWLFMFPLIGTLLLGRRF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GIYCLMLTALTLIIMGLGFTAQWVPWPELPDYSLEIYLVVVLNFLTINVMLCLATGFLTD
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLSDSLERTHASRRATVLGLARLSGFKDADSARHLNRIAKASELLTQALLSSPHRPDELT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PEFAENIGLSATLHDIGMIGVADNLQSKQLTMTPDMESERYKHTLIGDRLLGELLREAPD
HHHHHCCCCCEEHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCH
CVLLAMARDIAAYHHERWDGEGFPGKLKGKSIPLAARVVALIDTVDDLLCHPDPRFRMTY
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEH
EQARTHIKGLKGSILDPLLVDTFLSEPAMREIWH
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]