| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ina [H]
Identifier: 119776756
GI number: 119776756
Start: 4263188
End: 4266004
Strand: Reverse
Name: ina [H]
Synonym: Sama_3624
Alternate gene names: 119776756
Gene position: 4266004-4263188 (Counterclockwise)
Preceding gene: 119776757
Following gene: 119776754
Centisome position: 99.07
GC content: 55.56
Gene sequence:
>2817_bases ATGGTCAAACGATTTAATACGCCCAAGCTCTGTGCCTTGGGGATTCTACTGGCGCTGGCCGGTGGTCAGGCGCTGGCGGC ACCTGCCATGGGTTCACCGGCCGACAGTGGCGTTATCAATAAAGAGCGCGTGCTTTACTGGCTTATCAAGCGTGGTGAAA TTGCCGAAGATGCCAGTGACGAAACCAAAGCCGCTGCCGTGGCTGCGTTCGTGGCCCGGGCCAAATCGTCCACACCCGCG ATGGAGCAAATCAAAGCTCAGGAGCAAAGCCTTGCCAGTAAGGCTCGCTATGCTCAAAAGCTGCGCAGCCAATACCAGCA GGTGGATGACGCCGATGTCACCAAAACCGTTAAGGTACTTGGCGTGTTGGTGGATTTTCCGGATCTGCCCTACAACAATA ACCGCCTGACAGCGGGTGATACTGACATGTATTACTCCAGCTATCCGGCAATTCATTATTCCCAGATGCTGTTTTCTGCT TCGGGCTTTACCGGACCGTCCAACCAGACGTTGATTTCCGGGTTTCAATATTTCCAGCAGGCTTCGGGCAACACCTTTTT CTTCACCGGCGCAGTCCGTGATTGGGTGCGGGCCGACAACAACGCCGCCTACTATGGTGGTAACGACCCCAGCAACGAAG ACAACGACAAGGCTGTGCCCGAGTTGGTGCTGGAGGCTGTCACCAAGGCAGTGGCTGGCATGAGTGCCTCCGAGCTTGCC AGCTATGACGTGGAAGACCCATACGATATCAACAGTAACGGCAACCTCAACGAACCAGACGGCATTATCGACCACATCAT GCTGTTCCATTCCAGCATTGGTGAAGAAGCCGGTGGTGGCGTGCTCGGCGCCGATGCTATCTGGTCACACAGATTCTTTA TCCAGAGTGATCCCTCTGCGTACGGCAAGGCCATTCCCGGCACCAACCTGAGAGCCTATGGCTACACGGTGCAGCCCATA GATGCCGCTGCCGGGGTGTGCACCCACGAATTTGGCCATGATCTTGGTCTGCCCGATGAATATGACTACGACCCGGACGG TGATGGCTCGCCTGTGGGTAGCTGGTCGCTGATGTCCGGTGGTAGTTGGACTGGTACTGTGGCGGGTTCGGAGCCAGTGG GTTTCAGTCCTTATGCGCGCTCATTCCTGCAGCGCGAATACAAGGGTAAATGGGTTAAGGAACAGGAAATCAGCCTCGAT AGCCTGAATTCTGCCGGCACCGATTTCAATCTGGTGGAAGGGGTCAATGCCAACGGGGTTAACCAGCTGTCACTTAAGGT GCCCAGCGAGCCTCTGCCGTTCAAGGCGCCCTATGCCGGAGACTATCAGTACTACTCCAATAAGGGGCATAAGCTGAACA ATGCCATGTCCTTCAACGTGACCCTGCCTGTGGTGGATTCTCTCACGTTGAAAATGCGCGCCCACTGGGATATCGAGTTC GACTTCGACTATATGCAGGTGCAGGTGGATGGTACGCCCATTCCGGGCAACCACACAAAGGCCACCAGTTATTACGAGGC AGGACGCAATGTTATTACCGGTAGCTCAGCCAATATTGCCGGAAACGAAGGTCCTGATCACTGGGTTGAGCTGACATACG ATCTCAGCGCTTACAAGGGCATGAGCAAGCAGATCAGCATAGTGTACAAAACCGACGAGTTTGAAGGGGGTTACGGTATC GCCATCGATAACCTGTCTATCGTCTCCGGCAGTGAAACCCTTTACAGCGATGATGCCGAAACCAGCGACAAGATGATGTT GGCAGGCTTTGTTCGCACCACGGATACCCGTCCGGGCAATGACCGCCGCTATCTGATCCAACTGCGCAGCCAAAACGGTA TCGACAAGGGGCTGGCAAGCCACGGCTACAGTCCCGGTGTGGTGTTATGGTTTGAAAACTTCGATTACAGCGATAACAAC ACCACTGAGCACCCCGGCTATGGCCTGATTGGGGTAGTGGATGCGGATCAGAACCTGATTGGTACCCGTGGCACAGATGT GCAGATTCGCGATGCGGCCTTCAGTATCCGTCAGCAAACAGCGTACGCCGGTGATACCAACCTCGGCCCTGTGAGTTTGT TCGATGATTCACTGGATTACAGTGCGCCGCTCAAGCCCCAGGCGGGGATGATATTGCCTGAGCTCGGCCTGACCATGGAA GTGATCCAGCTCGCCGCCAATAACAGCACGGCAACGGTACGACTGAAGAAACACGACGGCAGTGTGCCTGAGCCAACGGA CATGAACGTCAGCGTGGGGGTCACCTTCTCTGGTGCTACGGCAAACTTTACCAGCACTGTCACCGGTGGCGACGGTAATT ACAGCTACTTCTGGGACTTTGGTAATGGCGCCAGTTCTACTCAGGCCAACCCGAGTTACACCTACGGTAATACCGGAACC TATGACATCAGCCTGACGGTGACCGATGGCAAAGGTGTTGGGGTGACTGTGACTCAGCAATTGTCGGTAACTGTGCCCGT CACGGCGAGTTTCAGTCAGAGCGTCAGTCAGTTAACCGTCAGTTTTACCAACAGCAGCAGTGGTGGTGATGGAAACCTTA GCTACACCTGGAGCTTCGGTGATGGCCAAAGCAGCACAGCTGCCTCGCCAAGCCATACCTATGCAGCGGCGGGCAGCTAC ACTGTGACCCTCACTGTGACCGATGGCAAGGGGGTTTCCTCTACCCGCAGCGCCAGCGTAACCGTTAGCGCACCTGCAGT AACACCTTCAGATGGTGGTTCGGGTGGTGGCAGCCTGGGATGGTTGGCCACCCTGGCGCTGGTGCTTGCCGGTATGGCAA GACGCAGACAAGCCTGA
Upstream 100 bases:
>100_bases CGGACATGCCGGGGGGCAGCGACTACAATTGGAACATTCCCTGATGTTTCGGGGTCGAAGTAAAAGGTCGTCACAGCCCG GCCGGAAAGGAAGGTTATCA
Downstream 100 bases:
>100_bases TGTAAAAAACGCCCCGTTTGGGGCGTTTTTTATTGAGGTCCGAGGATATAATCCATGGCAGCAGGGAGAAATATTTCGCT GACAATCAGCTCGTCCCCCT
Product: protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 938; Mature: 938
Protein sequence:
>938_residues MVKRFNTPKLCALGILLALAGGQALAAPAMGSPADSGVINKERVLYWLIKRGEIAEDASDETKAAAVAAFVARAKSSTPA MEQIKAQEQSLASKARYAQKLRSQYQQVDDADVTKTVKVLGVLVDFPDLPYNNNRLTAGDTDMYYSSYPAIHYSQMLFSA SGFTGPSNQTLISGFQYFQQASGNTFFFTGAVRDWVRADNNAAYYGGNDPSNEDNDKAVPELVLEAVTKAVAGMSASELA SYDVEDPYDINSNGNLNEPDGIIDHIMLFHSSIGEEAGGGVLGADAIWSHRFFIQSDPSAYGKAIPGTNLRAYGYTVQPI DAAAGVCTHEFGHDLGLPDEYDYDPDGDGSPVGSWSLMSGGSWTGTVAGSEPVGFSPYARSFLQREYKGKWVKEQEISLD SLNSAGTDFNLVEGVNANGVNQLSLKVPSEPLPFKAPYAGDYQYYSNKGHKLNNAMSFNVTLPVVDSLTLKMRAHWDIEF DFDYMQVQVDGTPIPGNHTKATSYYEAGRNVITGSSANIAGNEGPDHWVELTYDLSAYKGMSKQISIVYKTDEFEGGYGI AIDNLSIVSGSETLYSDDAETSDKMMLAGFVRTTDTRPGNDRRYLIQLRSQNGIDKGLASHGYSPGVVLWFENFDYSDNN TTEHPGYGLIGVVDADQNLIGTRGTDVQIRDAAFSIRQQTAYAGDTNLGPVSLFDDSLDYSAPLKPQAGMILPELGLTME VIQLAANNSTATVRLKKHDGSVPEPTDMNVSVGVTFSGATANFTSTVTGGDGNYSYFWDFGNGASSTQANPSYTYGNTGT YDISLTVTDGKGVGVTVTQQLSVTVPVTASFSQSVSQLTVSFTNSSSGGDGNLSYTWSFGDGQSSTAASPSHTYAAAGSY TVTLTVTDGKGVSSTRSASVTVSAPAVTPSDGGSGGGSLGWLATLALVLAGMARRRQA
Sequences:
>Translated_938_residues MVKRFNTPKLCALGILLALAGGQALAAPAMGSPADSGVINKERVLYWLIKRGEIAEDASDETKAAAVAAFVARAKSSTPA MEQIKAQEQSLASKARYAQKLRSQYQQVDDADVTKTVKVLGVLVDFPDLPYNNNRLTAGDTDMYYSSYPAIHYSQMLFSA SGFTGPSNQTLISGFQYFQQASGNTFFFTGAVRDWVRADNNAAYYGGNDPSNEDNDKAVPELVLEAVTKAVAGMSASELA SYDVEDPYDINSNGNLNEPDGIIDHIMLFHSSIGEEAGGGVLGADAIWSHRFFIQSDPSAYGKAIPGTNLRAYGYTVQPI DAAAGVCTHEFGHDLGLPDEYDYDPDGDGSPVGSWSLMSGGSWTGTVAGSEPVGFSPYARSFLQREYKGKWVKEQEISLD SLNSAGTDFNLVEGVNANGVNQLSLKVPSEPLPFKAPYAGDYQYYSNKGHKLNNAMSFNVTLPVVDSLTLKMRAHWDIEF DFDYMQVQVDGTPIPGNHTKATSYYEAGRNVITGSSANIAGNEGPDHWVELTYDLSAYKGMSKQISIVYKTDEFEGGYGI AIDNLSIVSGSETLYSDDAETSDKMMLAGFVRTTDTRPGNDRRYLIQLRSQNGIDKGLASHGYSPGVVLWFENFDYSDNN TTEHPGYGLIGVVDADQNLIGTRGTDVQIRDAAFSIRQQTAYAGDTNLGPVSLFDDSLDYSAPLKPQAGMILPELGLTME VIQLAANNSTATVRLKKHDGSVPEPTDMNVSVGVTFSGATANFTSTVTGGDGNYSYFWDFGNGASSTQANPSYTYGNTGT YDISLTVTDGKGVGVTVTQQLSVTVPVTASFSQSVSQLTVSFTNSSSGGDGNLSYTWSFGDGQSSTAASPSHTYAAAGSY TVTLTVTDGKGVSSTRSASVTVSAPAVTPSDGGSGGGSLGWLATLALVLAGMARRRQA >Mature_938_residues MVKRFNTPKLCALGILLALAGGQALAAPAMGSPADSGVINKERVLYWLIKRGEIAEDASDETKAAAVAAFVARAKSSTPA MEQIKAQEQSLASKARYAQKLRSQYQQVDDADVTKTVKVLGVLVDFPDLPYNNNRLTAGDTDMYYSSYPAIHYSQMLFSA SGFTGPSNQTLISGFQYFQQASGNTFFFTGAVRDWVRADNNAAYYGGNDPSNEDNDKAVPELVLEAVTKAVAGMSASELA SYDVEDPYDINSNGNLNEPDGIIDHIMLFHSSIGEEAGGGVLGADAIWSHRFFIQSDPSAYGKAIPGTNLRAYGYTVQPI DAAAGVCTHEFGHDLGLPDEYDYDPDGDGSPVGSWSLMSGGSWTGTVAGSEPVGFSPYARSFLQREYKGKWVKEQEISLD SLNSAGTDFNLVEGVNANGVNQLSLKVPSEPLPFKAPYAGDYQYYSNKGHKLNNAMSFNVTLPVVDSLTLKMRAHWDIEF DFDYMQVQVDGTPIPGNHTKATSYYEAGRNVITGSSANIAGNEGPDHWVELTYDLSAYKGMSKQISIVYKTDEFEGGYGI AIDNLSIVSGSETLYSDDAETSDKMMLAGFVRTTDTRPGNDRRYLIQLRSQNGIDKGLASHGYSPGVVLWFENFDYSDNN TTEHPGYGLIGVVDADQNLIGTRGTDVQIRDAAFSIRQQTAYAGDTNLGPVSLFDDSLDYSAPLKPQAGMILPELGLTME VIQLAANNSTATVRLKKHDGSVPEPTDMNVSVGVTFSGATANFTSTVTGGDGNYSYFWDFGNGASSTQANPSYTYGNTGT YDISLTVTDGKGVGVTVTQQLSVTVPVTASFSQSVSQLTVSFTNSSSGGDGNLSYTWSFGDGQSSTAASPSHTYAAAGSY TVTLTVTDGKGVSSTRSASVTVSAPAVTPSDGGSGGGSLGWLATLALVLAGMARRRQA
Specific function: Neutral metalloprotease that is secreted to degrade antibacterial proteins produced by the insect host for its defense (attacins and cecropins). Probably degrades some unknown crucial protein(s) too, since it is toxic when injected to insect larvae [H]
COG id: COG4412
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012300 - InterPro: IPR008757 [H]
Pfam domain/function: PF05547 Peptidase_M6 [H]
EC number: NA
Molecular weight: Translated: 99915; Mature: 99915
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS50093 PKD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKRFNTPKLCALGILLALAGGQALAAPAMGSPADSGVINKERVLYWLIKRGEIAEDASD CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC ETKAAAVAAFVARAKSSTPAMEQIKAQEQSLASKARYAQKLRSQYQQVDDADVTKTVKVL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GVLVDFPDLPYNNNRLTAGDTDMYYSSYPAIHYSQMLFSASGFTGPSNQTLISGFQYFQQ HHEECCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH ASGNTFFFTGAVRDWVRADNNAAYYGGNDPSNEDNDKAVPELVLEAVTKAVAGMSASELA CCCCEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH SYDVEDPYDINSNGNLNEPDGIIDHIMLFHSSIGEEAGGGVLGADAIWSHRFFIQSDPSA CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHEEEEEEEECCCHH YGKAIPGTNLRAYGYTVQPIDAAAGVCTHEFGHDLGLPDEYDYDPDGDGSPVGSWSLMSG HCCCCCCCCEEEECEEECCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECC GSWTGTVAGSEPVGFSPYARSFLQREYKGKWVKEQEISLDSLNSAGTDFNLVEGVNANGV CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCHHCCCCCCCCCEEECCCCCCCC NQLSLKVPSEPLPFKAPYAGDYQYYSNKGHKLNNAMSFNVTLPVVDSLTLKMRAHWDIEF EEEEEECCCCCCCCCCCCCCCCHHCCCCCCEECCEEEEEEEEEEECCEEEEEEEEEEEEE DFDYMQVQVDGTPIPGNHTKATSYYEAGRNVITGSSANIAGNEGPDHWVELTYDLSAYKG CCEEEEEEECCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEHHHHCC MSKQISIVYKTDEFEGGYGIAIDNLSIVSGSETLYSDDAETSDKMMLAGFVRTTDTRPGN CCCEEEEEEEECCCCCCEEEEECCEEEEECCCCEECCCCCCCCCEEEEEEEEECCCCCCC DRRYLIQLRSQNGIDKGLASHGYSPGVVLWFENFDYSDNNTTEHPGYGLIGVVDADQNLI CCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC GTRGTDVQIRDAAFSIRQQTAYAGDTNLGPVSLFDDSLDYSAPLKPQAGMILPELGLTME CCCCCCEEEEHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCHHH VIQLAANNSTATVRLKKHDGSVPEPTDMNVSVGVTFSGATANFTSTVTGGDGNYSYFWDF HHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEEC GNGASSTQANPSYTYGNTGTYDISLTVTDGKGVGVTVTQQLSVTVPVTASFSQSVSQLTV CCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEEECHHHHCCEEEEE SFTNSSSGGDGNLSYTWSFGDGQSSTAASPSHTYAAAGSYTVTLTVTDGKGVSSTRSASV EEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCCCCCEEE TVSAPAVTPSDGGSGGGSLGWLATLALVLAGMARRRQA EEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVKRFNTPKLCALGILLALAGGQALAAPAMGSPADSGVINKERVLYWLIKRGEIAEDASD CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC ETKAAAVAAFVARAKSSTPAMEQIKAQEQSLASKARYAQKLRSQYQQVDDADVTKTVKVL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GVLVDFPDLPYNNNRLTAGDTDMYYSSYPAIHYSQMLFSASGFTGPSNQTLISGFQYFQQ HHEECCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH ASGNTFFFTGAVRDWVRADNNAAYYGGNDPSNEDNDKAVPELVLEAVTKAVAGMSASELA CCCCEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH SYDVEDPYDINSNGNLNEPDGIIDHIMLFHSSIGEEAGGGVLGADAIWSHRFFIQSDPSA CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHEEEEEEEECCCHH YGKAIPGTNLRAYGYTVQPIDAAAGVCTHEFGHDLGLPDEYDYDPDGDGSPVGSWSLMSG HCCCCCCCCEEEECEEECCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECC GSWTGTVAGSEPVGFSPYARSFLQREYKGKWVKEQEISLDSLNSAGTDFNLVEGVNANGV CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCHHCCCCCCCCCEEECCCCCCCC NQLSLKVPSEPLPFKAPYAGDYQYYSNKGHKLNNAMSFNVTLPVVDSLTLKMRAHWDIEF EEEEEECCCCCCCCCCCCCCCCHHCCCCCCEECCEEEEEEEEEEECCEEEEEEEEEEEEE DFDYMQVQVDGTPIPGNHTKATSYYEAGRNVITGSSANIAGNEGPDHWVELTYDLSAYKG CCEEEEEEECCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEHHHHCC MSKQISIVYKTDEFEGGYGIAIDNLSIVSGSETLYSDDAETSDKMMLAGFVRTTDTRPGN CCCEEEEEEEECCCCCCEEEEECCEEEEECCCCEECCCCCCCCCEEEEEEEEECCCCCCC DRRYLIQLRSQNGIDKGLASHGYSPGVVLWFENFDYSDNNTTEHPGYGLIGVVDADQNLI CCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC GTRGTDVQIRDAAFSIRQQTAYAGDTNLGPVSLFDDSLDYSAPLKPQAGMILPELGLTME CCCCCCEEEEHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCHHH VIQLAANNSTATVRLKKHDGSVPEPTDMNVSVGVTFSGATANFTSTVTGGDGNYSYFWDF HHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEEC GNGASSTQANPSYTYGNTGTYDISLTVTDGKGVGVTVTQQLSVTVPVTASFSQSVSQLTV CCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEEECHHHHCCEEEEE SFTNSSSGGDGNLSYTWSFGDGQSSTAASPSHTYAAAGSYTVTLTVTDGKGVSSTRSASV EEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCCCCCEEE TVSAPAVTPSDGGSGGGSLGWLATLALVLAGMARRRQA EEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2089225; 6421577 [H]