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The map label for this gene is yjdF [H]

Identifier: 119776718

GI number: 119776718

Start: 4219015

End: 4219620

Strand: Reverse

Name: yjdF [H]

Synonym: Sama_3586

Alternate gene names: 119776718

Gene position: 4219620-4219015 (Counterclockwise)

Preceding gene: 119776719

Following gene: 119776716

Centisome position: 97.99

GC content: 55.94

Gene sequence:

>606_bases
ATGGGAAGGATGCTTTGGCTGTTGGTGTTTTTTGCCGTATTCCTCTGGTCGGCGGTGGGCCCCTTTGACCGCTTTACCTG
GTTTCTGGAAGTGGTACCGGCGCTGATCGGGTTTGCTATCCTCGCAGCCACTGAGCGGCGTTTCCCGCTCACGCCTCTGG
TGTATGGACTTATCCTTATCCACTGCGTGATCCTGATGGTGGGCGGTCATTACACCTATGCTGAGGTGCCGCTGTTTGAC
TGGCTGAAAGAGCCCATGGGTTGGGAGCGCAACAATTACGACAAGCTGGGGCATTTTGCCCAGGGTTTTATCCCCGCCAT
GATTGCCCGTGAATTGGTGCTGAGACTTGGTGTGATGCAAAAGGGCAACTGGTGCAATTTCTTTGTGGTGTGTTTCTGCC
TGGCGCTGAGTGCGTTTTACGAACTCATCGAGTGGTGGGTGGCCATTGCAAGCGGTGAGGGCGCAGAGGCCTTTTTGGGG
ACTCAGGGGTATGTGTGGGACACCCAATCTGACATGGGCTTTGCTCTGCTTGGCGCCATAGTGGCTCTGCTCAGTTTAAG
CCGGTGGCATGACCGCCAGTTGACGGCGTTGACATCCAGGGCCTGA

Upstream 100 bases:

>100_bases
ATTTAACAAACGACTGGATTGAAGCTGGGTGCCTGGCACTGACAAGCGGACGCTTCGGGGTTACACTGCCAAAGTCTCTT
GATTGAATTGAGGTTTCTCC

Downstream 100 bases:

>100_bases
TAACAACAGATACTTAAAACCGCCCTGGGGCGGTTTTTTCTTTTAGATGTCAGTCTTTTTCATCATCGCCGCTGGGAGAT
GCCTTGTTTTTGCGCTGTTC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MGRMLWLLVFFAVFLWSAVGPFDRFTWFLEVVPALIGFAILAATERRFPLTPLVYGLILIHCVILMVGGHYTYAEVPLFD
WLKEPMGWERNNYDKLGHFAQGFIPAMIARELVLRLGVMQKGNWCNFFVVCFCLALSAFYELIEWWVAIASGEGAEAFLG
TQGYVWDTQSDMGFALLGAIVALLSLSRWHDRQLTALTSRA

Sequences:

>Translated_201_residues
MGRMLWLLVFFAVFLWSAVGPFDRFTWFLEVVPALIGFAILAATERRFPLTPLVYGLILIHCVILMVGGHYTYAEVPLFD
WLKEPMGWERNNYDKLGHFAQGFIPAMIARELVLRLGVMQKGNWCNFFVVCFCLALSAFYELIEWWVAIASGEGAEAFLG
TQGYVWDTQSDMGFALLGAIVALLSLSRWHDRQLTALTSRA
>Mature_200_residues
GRMLWLLVFFAVFLWSAVGPFDRFTWFLEVVPALIGFAILAATERRFPLTPLVYGLILIHCVILMVGGHYTYAEVPLFDW
LKEPMGWERNNYDKLGHFAQGFIPAMIARELVLRLGVMQKGNWCNFFVVCFCLALSAFYELIEWWVAIASGEGAEAFLGT
QGYVWDTQSDMGFALLGAIVALLSLSRWHDRQLTALTSRA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=187, Percent_Identity=51.3368983957219, Blast_Score=201, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22826; Mature: 22695

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRMLWLLVFFAVFLWSAVGPFDRFTWFLEVVPALIGFAILAATERRFPLTPLVYGLILI
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HCVILMVGGHYTYAEVPLFDWLKEPMGWERNNYDKLGHFAQGFIPAMIARELVLRLGVMQ
HHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KGNWCNFFVVCFCLALSAFYELIEWWVAIASGEGAEAFLGTQGYVWDTQSDMGFALLGAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEECCCCCCHHHHHHHH
VALLSLSRWHDRQLTALTSRA
HHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
GRMLWLLVFFAVFLWSAVGPFDRFTWFLEVVPALIGFAILAATERRFPLTPLVYGLILI
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HCVILMVGGHYTYAEVPLFDWLKEPMGWERNNYDKLGHFAQGFIPAMIARELVLRLGVMQ
HHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KGNWCNFFVVCFCLALSAFYELIEWWVAIASGEGAEAFLGTQGYVWDTQSDMGFALLGAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEECCCCCCHHHHHHHH
VALLSLSRWHDRQLTALTSRA
HHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]