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The map label for this gene is ybhS [H]

Identifier: 119776719

GI number: 119776719

Start: 4219699

End: 4220826

Strand: Reverse

Name: ybhS [H]

Synonym: Sama_3587

Alternate gene names: 119776719

Gene position: 4220826-4219699 (Counterclockwise)

Preceding gene: 119776720

Following gene: 119776718

Centisome position: 98.02

GC content: 56.29

Gene sequence:

>1128_bases
ATGTGGCTTAGAATTCTGGCCATCCTCACCAAAGAGCTGAAACAGCTGTCACGGGATCGCATGACCTTCGGCATGATAGT
GATGATCCCACTGGTACAGCTGATGCTGTTTGGTTACGCCATCAATACCGATGCCAGGCATCTGCCCGCCGGATTGGTGG
ATATGAGCGGCAACAGCCAGGGCAGAGCTCTGGTGCAGGCCGTTTCTGCCACGCAAGTGGTCGACTTTATTGAGTCTTAT
CAGTCAATTGCCCAGGCTGAGGAGGCGATTACCGCCGGACATGTGAAGGCTGCACTGGTGATCCCTGCTGACTTTGGTTC
CCGTCTGATTAGCCATCCACAGGCACAGACCGGCCAGGGGGCCTATTTTTCGCGCCCGGTGGCACAGTGGCTGGTGGATG
GTTCAGATACGGTGGTGGCTTCTACCATCAAGTCACTCAGAACCATGCCGTTATCTGAAGTGCTTGGGCTGCCGGTGCCC
GAGAGCACCGCCACCATGGAGGTGGTGATGTACTTCAACCCCGAGCAACGTACCGTGGTCAACATAGTCCCGGGTCTTCT
CGGGGTAATACTGACCATGACTATGGTGCTCTTTACCTCGGCCGCCATTGTGAGGGAGCGGGAGCAGGGTAACATGGAGT
TTTTGATCACCACGCCGGTCAAGCCGCTGGAGCTGATGCTGGGCAAGATTTTGCCCTACGTGTTGGTGGGCTTTGTGCAG
GTGGCCATTATTCTGGGAGCAGGTAAGTTGTTGTTCGCCCTGCCCATACGGGGAGGCCTTGAATCGCTGGCGTTGGCGGC
CATGCTGTTTATTCTGGCGAGTCTCACCCTTGGCCTGGTGATTTCCACCATAGCCCGTACCCAACTGCAGGCCATGCAGA
TGACGGTGTTTATCCTGCTGCCATCCATACTGCTGTCCGGCTTTATGTTTCCCTACGAAGCCATGCCCGTACCGGCGCAG
TGGATTGCCGAAGCTCTGCCGGCAACGCACTTTATGCGCATGTCCCGGGCAATTATTCTGCGGGATGCCGAGGTAACGCA
GCTGGGATTCGATGCGCTCTGGTTGTTGGGTTTCTGTGCCCTGGGGCTGCTGGTGGCTACCCTCAAATTTAACAAACGAC
TGGATTGA

Upstream 100 bases:

>100_bases
CTTGGCCAGCGCGTCGGCACTAGAGAAATGGACGAGGTCCGCCCCAGCCTTGAGGATGTGTTCGTGACCTGCACCGGTCA
GCGAGCCGAAGGAGGTGCCC

Downstream 100 bases:

>100_bases
AGCTGGGTGCCTGGCACTGACAAGCGGACGCTTCGGGGTTACACTGCCAAAGTCTCTTGATTGAATTGAGGTTTCTCCAT
GGGAAGGATGCTTTGGCTGT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MWLRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQGRALVQAVSATQVVDFIESY
QSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQGAYFSRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVP
ESTATMEVVMYFNPEQRTVVNIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQ
VAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILLPSILLSGFMFPYEAMPVPAQ
WIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCALGLLVATLKFNKRLD

Sequences:

>Translated_375_residues
MWLRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQGRALVQAVSATQVVDFIESY
QSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQGAYFSRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVP
ESTATMEVVMYFNPEQRTVVNIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQ
VAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILLPSILLSGFMFPYEAMPVPAQ
WIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCALGLLVATLKFNKRLD
>Mature_375_residues
MWLRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQGRALVQAVSATQVVDFIESY
QSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQGAYFSRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVP
ESTATMEVVMYFNPEQRTVVNIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQ
VAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILLPSILLSGFMFPYEAMPVPAQ
WIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCALGLLVATLKFNKRLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=356, Percent_Identity=28.9325842696629, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787010, Length=359, Percent_Identity=25.6267409470752, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI48994943, Length=356, Percent_Identity=26.4044943820225, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI226510979, Length=225, Percent_Identity=32.4444444444444, Blast_Score=92, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24650855, Length=396, Percent_Identity=22.4747474747475, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650853, Length=396, Percent_Identity=22.4747474747475, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI85725260, Length=408, Percent_Identity=24.5098039215686, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40845; Mature: 40845

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC
GRALVQAVSATQVVDFIESYQSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCCCCCCCCC
AYFSRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVPESTATMEVVMYFNPEQRTVV
CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
NIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
VAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILL
HHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSILLSGFMFPYEAMPVPAQWIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHH
LGLLVATLKFNKRLD
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MWLRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVDMSGNSQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC
GRALVQAVSATQVVDFIESYQSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCCCCCCCCC
AYFSRPVAQWLVDGSDTVVASTIKSLRTMPLSEVLGLPVPESTATMEVVMYFNPEQRTVV
CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
NIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
VAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILL
HHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSILLSGFMFPYEAMPVPAQWIAEALPATHFMRMSRAIILRDAEVTQLGFDALWLLGFCA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHH
LGLLVATLKFNKRLD
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]