| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776716
Identifier: 119776716
GI number: 119776716
Start: 4218117
End: 4218443
Strand: Reverse
Name: 119776716
Synonym: Sama_3584
Alternate gene names: NA
Gene position: 4218443-4218117 (Counterclockwise)
Preceding gene: 119776718
Following gene: 119776714
Centisome position: 97.96
GC content: 54.43
Gene sequence:
>327_bases ATGAAAAACCTGACAATAAAAAATCTGACCGTAAAGGGTTTGCTGCTGGCCAGCGTCTGTGTGGCGCCATTTTGCCAGAG TGCTGATGTGGGCCAGCTTGAGCGGGAAATTCGCCAGAGCCTGAAGCAGGTTCAGCAGCAGGGGCTGGTGAGCGAACAAA GTGATATTCGCATAGAGCAGAGCCAGTCTTTTTCAGTGCTGACGCCCACGATGTCAACAGACTCCATGGTAGATAGCCGG GTGCAGATGCAAGCCCTGCCGCTGGAATCGGTCAGCGGTTTGCTGCCGGATTCATTCGATGGCGTGCGCTTGAGCGCGAG GGATTAA
Upstream 100 bases:
>100_bases GCTAAAAAATCATCATAGTCAGTGTGTTACATGTTTGGCACGGGAGTTGATTAGTCTGTCTGTCCAACAGGGACGAACAA TTAACCCAAGGAGCTTTACC
Downstream 100 bases:
>100_bases GCGTTATGAAATCTGCTTATGCCGCCGGAGCCGTGACTCTCCCATGGCCCGGTGGTGACAGAAAAAGTCGTCAGTTAAAA CACAGGGAATAGGGCCGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MKNLTIKNLTVKGLLLASVCVAPFCQSADVGQLEREIRQSLKQVQQQGLVSEQSDIRIEQSQSFSVLTPTMSTDSMVDSR VQMQALPLESVSGLLPDSFDGVRLSARD
Sequences:
>Translated_108_residues MKNLTIKNLTVKGLLLASVCVAPFCQSADVGQLEREIRQSLKQVQQQGLVSEQSDIRIEQSQSFSVLTPTMSTDSMVDSR VQMQALPLESVSGLLPDSFDGVRLSARD >Mature_108_residues MKNLTIKNLTVKGLLLASVCVAPFCQSADVGQLEREIRQSLKQVQQQGLVSEQSDIRIEQSQSFSVLTPTMSTDSMVDSR VQMQALPLESVSGLLPDSFDGVRLSARD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11826; Mature: 11826
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLTIKNLTVKGLLLASVCVAPFCQSADVGQLEREIRQSLKQVQQQGLVSEQSDIRIEQ CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC SQSFSVLTPTMSTDSMVDSRVQMQALPLESVSGLLPDSFDGVRLSARD CCCCEEECCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCC >Mature Secondary Structure MKNLTIKNLTVKGLLLASVCVAPFCQSADVGQLEREIRQSLKQVQQQGLVSEQSDIRIEQ CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC SQSFSVLTPTMSTDSMVDSRVQMQALPLESVSGLLPDSFDGVRLSARD CCCCEEECCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA