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The map label for this gene is dinF [H]

Identifier: 119776633

GI number: 119776633

Start: 4132918

End: 4134231

Strand: Direct

Name: dinF [H]

Synonym: Sama_3501

Alternate gene names: 119776633

Gene position: 4132918-4134231 (Clockwise)

Preceding gene: 119776631

Following gene: 119776635

Centisome position: 95.98

GC content: 56.85

Gene sequence:

>1314_bases
TTGCCATTGACCTGGTCAGCCCATCAACGTCTGTGGGCCCTGGCGCTACCCATGATGCTGTCCAATATCACAGTGCCGCT
GCTCGGGCTGGTGGATACCGCCATCATGGGTCACCTGAGTGAGGCCTATTATTTGGGCGCGGTTGCACTGGGGTCAACAG
TGTTCACGCTAATCGTCTGGTTGCTGGGGTTTCTGCGGATGGCCACCACAGGCCTGACCGCCCAAGCCTGGGGGGCAAGC
CAGGGGGAAACCCAGAAGCGAATTCTTATGCAAGGGCTAACTCTGGCGCTGGGCGCAGGGCTATTGGTATTGCTGGTGCA
GCCTGTTTTGCTTAATACGCTGCTGGGCTGGTCAGATGCCAGCGCAGAAGTACGTCAATACTGCCGGGACTACTTTGCCA
TTCGTATCTGGTCATTGCCGCTGGCGCTGGCCAATCTGGTCATGCTTGGCTGGCTTCTGGGCCGCCAACAACCCAAGGTA
GCCATGTGGCAGCTGATCCTGGCCAACCTGGTCAATATCGCACTGGATGTCCTGTTTGTGTTTGGCTTTGGCTGGGGGGT
TGCAGGTGCCGCATTGGCGTCCGTCATCGCTGATCTGTGCGCCTTTTCCATCGCGGCTTTTTTTACCGCCAAGGCCTGGC
GAACGCTTGCCTGCCCATCCCCCGTACTGCGTGACATTATGGCGAATCTCGGCCAACTGTTCAGACTGAACCGGGATATC
TTTATTCGCAGCCTTTGTCTGCAAGCCACCTTTGCCTTTATGACTTTCAAGGGCGCTGGCCTGGGAGACACTACAGTGGC
CGCCAACGCAGTACTGCTTAACTTTTTAATGCTGACATCCTACGCACTGGATGGGATTGCCTACTATGCCGAGGCCGAAA
CCGGCGCCGCCGTGGGGCGTCGCGACCCGGCTGCACTCGATAGTACTGTGGCATTGGCCTTTGCATGGTCGGCGGTTTTT
GCCTGCCTGTTCAGCGGTGGGTTTGCCCTGTGGGGAGAATGGCTGAGTACTTTGATGACCGACATTAGTGCAGTTCAGCA
GCTCGCCAATGAGTTTTTGCCCTGGCTGATTGCCATGCCATTACTGGCGTTCGGCTCCTACCTGTTCGATGGTGTATATA
TCGGCGCCACTCAGGGAAGAGTGATGAGAAACAGCATGCTGCTCTCAACCGTCGGGGTATTTTTTCCACTCTGGTGGGGA
TTTTCCGATTGGGGGAACCATGCACTTTGGCTCGCCATGGGCGGCTTTATGTTGTGCCGCAGCCTGAGTCTGGGCTGGCA
CTTTGTGCGCTATCGTCACGGCTTTGTTGCCTGA

Upstream 100 bases:

>100_bases
CAGCACCACAGCCGCCTGAGCCAGGCCCGAGAACCAAGCACATACAAACAGCAACACTTTATGCATTAAGAGGAACTCTC
TGATTAAACTTGTGAATTAT

Downstream 100 bases:

>100_bases
AATATGGCCGAAAATGGTTTAAATTGAACGAGAGCTATCTGTTAGTCCAATAAAAAACGCGGCCATCGGGCCGCGTTTTT
TATTGTCAGGCATCACTGGT

Product: DNA-damage-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MPLTWSAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVWLLGFLRMATTGLTAQAWGAS
QGETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLGWSDASAEVRQYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKV
AMWQLILANLVNIALDVLFVFGFGWGVAGAALASVIADLCAFSIAAFFTAKAWRTLACPSPVLRDIMANLGQLFRLNRDI
FIRSLCLQATFAFMTFKGAGLGDTTVAANAVLLNFLMLTSYALDGIAYYAEAETGAAVGRRDPAALDSTVALAFAWSAVF
ACLFSGGFALWGEWLSTLMTDISAVQQLANEFLPWLIAMPLLAFGSYLFDGVYIGATQGRVMRNSMLLSTVGVFFPLWWG
FSDWGNHALWLAMGGFMLCRSLSLGWHFVRYRHGFVA

Sequences:

>Translated_437_residues
MPLTWSAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVWLLGFLRMATTGLTAQAWGAS
QGETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLGWSDASAEVRQYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKV
AMWQLILANLVNIALDVLFVFGFGWGVAGAALASVIADLCAFSIAAFFTAKAWRTLACPSPVLRDIMANLGQLFRLNRDI
FIRSLCLQATFAFMTFKGAGLGDTTVAANAVLLNFLMLTSYALDGIAYYAEAETGAAVGRRDPAALDSTVALAFAWSAVF
ACLFSGGFALWGEWLSTLMTDISAVQQLANEFLPWLIAMPLLAFGSYLFDGVYIGATQGRVMRNSMLLSTVGVFFPLWWG
FSDWGNHALWLAMGGFMLCRSLSLGWHFVRYRHGFVA
>Mature_436_residues
PLTWSAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVWLLGFLRMATTGLTAQAWGASQ
GETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLGWSDASAEVRQYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKVA
MWQLILANLVNIALDVLFVFGFGWGVAGAALASVIADLCAFSIAAFFTAKAWRTLACPSPVLRDIMANLGQLFRLNRDIF
IRSLCLQATFAFMTFKGAGLGDTTVAANAVLLNFLMLTSYALDGIAYYAEAETGAAVGRRDPAALDSTVALAFAWSAVFA
CLFSGGFALWGEWLSTLMTDISAVQQLANEFLPWLIAMPLLAFGSYLFDGVYIGATQGRVMRNSMLLSTVGVFFPLWWGF
SDWGNHALWLAMGGFMLCRSLSLGWHFVRYRHGFVA

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790477, Length=432, Percent_Identity=44.4444444444444, Blast_Score=262, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 47659; Mature: 47528

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PLTWSAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGFLRMATTGLTAQAWGASQGETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLGWSDA
HHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAEVRQYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKVAMWQLILANLVNIALDVLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FGFGWGVAGAALASVIADLCAFSIAAFFTAKAWRTLACPSPVLRDIMANLGQLFRLNRDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FIRSLCLQATFAFMTFKGAGLGDTTVAANAVLLNFLMLTSYALDGIAYYAEAETGAAVGR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RDPAALDSTVALAFAWSAVFACLFSGGFALWGEWLSTLMTDISAVQQLANEFLPWLIAMP
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAFGSYLFDGVYIGATQGRVMRNSMLLSTVGVFFPLWWGFSDWGNHALWLAMGGFMLCR
HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHH
SLSLGWHFVRYRHGFVA
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]