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The map label for this gene is scoP [H]

Identifier: 119776624

GI number: 119776624

Start: 4123163

End: 4123798

Strand: Direct

Name: scoP [H]

Synonym: Sama_3492

Alternate gene names: 119776624

Gene position: 4123163-4123798 (Clockwise)

Preceding gene: 119776623

Following gene: 119776625

Centisome position: 95.75

GC content: 52.67

Gene sequence:

>636_bases
ATGAAAAAATCCTGGATGATGGCCGTCTTCTTCCTGGTGGGGATGGGCGGTCTGACACTGCTGATAAACTCGGGCGACAC
CAGTGATAGCCAGACACCACCCACACTGGACACGGGTTATGTGTTTCCTGCGCCCAAGCCGTTACCTCCTTTTAAACTGA
CCGATCAGCTGGGGCAAACCTTTGACAATCAAAGGCTCATGGGCAAGTGGAGCCTGATTTTTCTGGGTTACACCTCTTGC
CCTGACATCTGTCCAACGACCATGTCAAAGCTGGCGGCGGCTTATCCTGAACTGAATCAGGAAAATTCGCTGCAGGTGAT
TTTTCTCTCTGTCGACCCGGCGCGGGACACGCCAACCAGGCTGGCCCAATATGCGGCCTTTTTCCATCCGGATTTTCTCG
CCGTCACCGGAGAGCACAGCGAGTTATATTCGCTTACCCGGTCTCTGGGCATGGTGTACACCATGGTAGGTGATGGCCCC
GACTATCAGGTCGACCACAGTGCCTCCATCGTTGTGATTTCACCCAAAGGTGAAAGGTACGCCGTATTCAAACCCAAGAA
CGATGGCCAATCCATTCCACAAATACGCAATCAGGCGCTGATTTCTGATATGCGCCTGATTCGTCATCAATACTGA

Upstream 100 bases:

>100_bases
AGACCCCAGGCATGGCGATGGACGTGTTCCGCTTTTCTATCTATCACCTGATGCTGCTGTTTATCCTGCTGCTGGTTGAC
CACTACATATAGGGGCAAGC

Downstream 100 bases:

>100_bases
CCATCCTATGAACCCGGGGCAAAACACCCGTTTTGCCCTTGATGTTGCCCCCAAATCATCAAACGCCTGTCCACAAGAAA
AAATCCTTGTAAATGAGGCA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKKSWMMAVFFLVGMGGLTLLINSGDTSDSQTPPTLDTGYVFPAPKPLPPFKLTDQLGQTFDNQRLMGKWSLIFLGYTSC
PDICPTTMSKLAAAYPELNQENSLQVIFLSVDPARDTPTRLAQYAAFFHPDFLAVTGEHSELYSLTRSLGMVYTMVGDGP
DYQVDHSASIVVISPKGERYAVFKPKNDGQSIPQIRNQALISDMRLIRHQY

Sequences:

>Translated_211_residues
MKKSWMMAVFFLVGMGGLTLLINSGDTSDSQTPPTLDTGYVFPAPKPLPPFKLTDQLGQTFDNQRLMGKWSLIFLGYTSC
PDICPTTMSKLAAAYPELNQENSLQVIFLSVDPARDTPTRLAQYAAFFHPDFLAVTGEHSELYSLTRSLGMVYTMVGDGP
DYQVDHSASIVVISPKGERYAVFKPKNDGQSIPQIRNQALISDMRLIRHQY
>Mature_211_residues
MKKSWMMAVFFLVGMGGLTLLINSGDTSDSQTPPTLDTGYVFPAPKPLPPFKLTDQLGQTFDNQRLMGKWSLIFLGYTSC
PDICPTTMSKLAAAYPELNQENSLQVIFLSVDPARDTPTRLAQYAAFFHPDFLAVTGEHSELYSLTRSLGMVYTMVGDGP
DYQVDHSASIVVISPKGERYAVFKPKNDGQSIPQIRNQALISDMRLIRHQY

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=137, Percent_Identity=33.5766423357664, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI281182727, Length=132, Percent_Identity=34.8484848484849, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI281182722, Length=132, Percent_Identity=34.8484848484849, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI281182716, Length=132, Percent_Identity=34.8484848484849, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI153791313, Length=132, Percent_Identity=34.8484848484849, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17531419, Length=170, Percent_Identity=24.7058823529412, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6319498, Length=200, Percent_Identity=31, Blast_Score=105, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=178, Percent_Identity=33.7078651685393, Blast_Score=104, Evalue=9e-24,
Organism=Drosophila melanogaster, GI19920710, Length=134, Percent_Identity=35.0746268656716, Blast_Score=94, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23477; Mature: 23477

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSWMMAVFFLVGMGGLTLLINSGDTSDSQTPPTLDTGYVFPAPKPLPPFKLTDQLGQT
CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHH
FDNQRLMGKWSLIFLGYTSCPDICPTTMSKLAAAYPELNQENSLQVIFLSVDPARDTPTR
CCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHH
LAQYAAFFHPDFLAVTGEHSELYSLTRSLGMVYTMVGDGPDYQVDHSASIVVISPKGERY
HHHHHHHHCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCEECCCCEEEEECCCCCEE
AVFKPKNDGQSIPQIRNQALISDMRLIRHQY
EEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSWMMAVFFLVGMGGLTLLINSGDTSDSQTPPTLDTGYVFPAPKPLPPFKLTDQLGQT
CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHH
FDNQRLMGKWSLIFLGYTSCPDICPTTMSKLAAAYPELNQENSLQVIFLSVDPARDTPTR
CCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHH
LAQYAAFFHPDFLAVTGEHSELYSLTRSLGMVYTMVGDGPDYQVDHSASIVVISPKGERY
HHHHHHHHCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCEECCCCEEEEECCCCCEE
AVFKPKNDGQSIPQIRNQALISDMRLIRHQY
EEECCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]