| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776625
Identifier: 119776625
GI number: 119776625
Start: 4123967
End: 4124248
Strand: Direct
Name: 119776625
Synonym: Sama_3493
Alternate gene names: NA
Gene position: 4123967-4124248 (Clockwise)
Preceding gene: 119776624
Following gene: 119776626
Centisome position: 95.77
GC content: 51.77
Gene sequence:
>282_bases ATGTCAGAAAACACGGTAGAGCTCGGAAGCGAGCTGACCATCCGCAATATCCAGCCTATCTACAGCCAGTTAGCAGATCT GCTGCATCAGGGCAGACCCGTCACCCTGAATGCCGCCAGACTCATCAAGGCAGACACGGCTGGTCTGCAACTGCTGCTGT GCCTGCAGTCCCATTGTGAAAACAGCAGTATCCCATTGAACTGGAAAGGAATAACTACAGAACTTGTCGCTCAGTTCAAG CAGATGGGCATGCAACTTCCGGGAATAACCAGTCAAGCGTAA
Upstream 100 bases:
>100_bases GTCCACAAGAAAAAATCCTTGTAAATGAGGCAACAGTCCAAAATGGCGTCTATCTTTTGTGTGTAAAGGAACTCAGGTCC AGCACTCAAGGGATGCCTCT
Downstream 100 bases:
>100_bases AAGGACAACAACCTATGAAGAAGATTCTTGCCGTTGATGATTCGGCCTCAATGAGACAAATGGTGGGGTTTACGCTGAAA ACCGCCGGATTTGATGTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 93; Mature: 92
Protein sequence:
>93_residues MSENTVELGSELTIRNIQPIYSQLADLLHQGRPVTLNAARLIKADTAGLQLLLCLQSHCENSSIPLNWKGITTELVAQFK QMGMQLPGITSQA
Sequences:
>Translated_93_residues MSENTVELGSELTIRNIQPIYSQLADLLHQGRPVTLNAARLIKADTAGLQLLLCLQSHCENSSIPLNWKGITTELVAQFK QMGMQLPGITSQA >Mature_92_residues SENTVELGSELTIRNIQPIYSQLADLLHQGRPVTLNAARLIKADTAGLQLLLCLQSHCENSSIPLNWKGITTELVAQFKQ MGMQLPGITSQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10174; Mature: 10043
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENTVELGSELTIRNIQPIYSQLADLLHQGRPVTLNAARLIKADTAGLQLLLCLQSHCE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHCCHHHHHHHHHHHHHCC NSSIPLNWKGITTELVAQFKQMGMQLPGITSQA CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SENTVELGSELTIRNIQPIYSQLADLLHQGRPVTLNAARLIKADTAGLQLLLCLQSHCE CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHCCHHHHHHHHHHHHHCC NSSIPLNWKGITTELVAQFKQMGMQLPGITSQA CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA