| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776251
Identifier: 119776251
GI number: 119776251
Start: 3698165
End: 3699052
Strand: Direct
Name: 119776251
Synonym: Sama_3119
Alternate gene names: NA
Gene position: 3698165-3699052 (Clockwise)
Preceding gene: 119776249
Following gene: 119776252
Centisome position: 85.88
GC content: 57.21
Gene sequence:
>888_bases ATGAAAAAGTTATTCATTATGCTGGCGATGTTTTTTGCCGTCAGCCTGGCAACCAGCCCCGTGGTGGAAGCAAAGAAATT CGGCGGCAATAAGTCTGCCGGTAAAACTCAGCAAACGGCGCAGTCGCAGCCTGCGGCCACCAATACCACGGCCACCAATA CCACTGCAGCGCCTGCCACGGCAGCACCTGCGGCGAAAAAAGGCATGATGGGCGGTATGCTTGGCGGCCTGCTGGCAGGT GGCTTACTGGCGGCTCTCTTTATGGGTGAAGGTTTTGAAAACATCCAGATCATGGACATAGTGATCATCGCCTTGCTGGC CTTCGTGCTGTTTAAAGTCATCCGCATGCTGATGGCCTCCAAAGCACAGGCGCAGCCAAGACCAGCCTACTCAGGTGCAG GGCAAGCCAGCACCGCGCCGGGGCAGGACCTTTATCGCCAGCAGGCCGAACCCGCCGCCTTTGGAGGTCTCGGCGGCAAC AGCGGCTTCGCCCAGCCCCAGAGCACAGTACCGTTTCAATTACCACCGGGGTTCGATTTAGCCGCCTTTTTGGAAGGCGC CCGCGGCCACTATAAAACCCTGCAACAGGCCTGGAATGAGGGCGACCTGAACAAAATTCAGGAATACGTGTCGATTGAGC TCTTTAACGAACTCAGCCAGCAACGCCGTGAACTCGAAGGCCAGCAGCACACCGAAGTGATGTTCCTCGATGCCGAACTG GTGCGCGCCACCTACAACAACGAGCTTGCCGAAGTGAGCGTAAAATTCAGCGGCCGCTACCGCGACGCCGCTGAAGGCGT AGAGGAAGACATCAAGGAAGTCTGGCATCTGGAGCGTAACCTGCTGCAAGCCAACTCCCCCTGGCTGATTGTGGGCATCC AGCAATAA
Upstream 100 bases:
>100_bases TTCAGCACTTTCTTATTCATGCGGTTTTTATCACCATTGACATGAACCAACATGACGCTATGATGCCTGCCATTCGGTGT TTAAAATAGAGATGGAATAA
Downstream 100 bases:
>100_bases AAGCGCGCATTAGCATGCTCTTTGCCACGCAGTAACACCAAACAAAACCCCGGCACAGACCGGGGTTTTATTTTTATGGT CCGAAAGTCGATAGCAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Tim44 Domain Protein; Import Inner Membrane Translocase Subunit; Tim44-Like Domain-Contain Protein; Tim44-Like Domain Protein
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ
Sequences:
>Translated_295_residues MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ >Mature_295_residues MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ
Specific function: Unknown
COG id: COG4395
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31775; Mature: 31775
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPAT CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC AAPAAKKGMMGGMLGGLLAGGLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDL HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH AAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPAT CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC AAPAAKKGMMGGMLGGLLAGGLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDL HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH AAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA