Click here to switch to the map view.

The map label for this gene is 119776235

Identifier: 119776235

GI number: 119776235

Start: 3677222

End: 3677782

Strand: Direct

Name: 119776235

Synonym: Sama_3103

Alternate gene names: NA

Gene position: 3677222-3677782 (Clockwise)

Preceding gene: 119776230

Following gene: 119776237

Centisome position: 85.39

GC content: 50.27

Gene sequence:

>561_bases
ATGCAACGCGGCAAATTAATCAGATGGAACGATGAACGAGGTTTTGGTTTTATCAAACCAGAGCAGGACGGCGCTGACGA
TGTGTTTATTCACATCTCGTCACTGAAACAGATGAGTCGGGCGCCACGTATTGGCGACATCATAGTGTTTCAATTGCAAA
CCTCATCAGACGGCAAACAGCAAGCCGGTCTTGCCCGTATCGAAGGGGTGGCTATCAAACCCGGCTCACCAATCAAAGCC
CGCAAAACCTCAACGACATTTCCATTGGGTAAACTGCTGAAGGGCATGGTACTGATAGCCTTGATAGCCTTTGCGGTGCC
TAAATTAGCCCCGCTGGTGGAAGGCTTTATCTCTAAGGATACCCGCTATTCAGTGCCACCCATGGAGAGCGAGACCATAG
TGCCATACCCAGAACCAGTATTTCGCTGCGAAGGTAAAACCTATTGCAGTGAAATGCGCTCCTGTGCCGAAGCCACCTTC
TATCAAAACAATTGTCCGGGCACGAAAATGGACGGTGACAACGACGGCATCCCCTGTGAATCCCAATGGTGTGGTCACTG
A

Upstream 100 bases:

>100_bases
ACAGCACAGCCCTCAAGACACACCATAGTATTTACCCAGTGCATTCAGGGATGGCGGGTGAATGGCCCGAATCGCTCACA
CGCATTAACAGGGAAGCAAA

Downstream 100 bases:

>100_bases
TGTTCACGGCCCCAAAGCGTCCGCCATGCCCACACAAGCAGGTGCAGCGCCAGCAGGCCAGTCCAGGCGAAACAAAATAG
CAGCAGCGCCAGGGACGCCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: Cold Shock Domain Family Protein; Cold Shock Domain-Contain Protein; Cold-Shock Protein; Cold-Shock Domain-Contain Protein; Cold Shock Family Protein; Cold Shock/Excaliber Domain-Containing Protein CspD

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQRGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQQAGLARIEGVAIKPGSPIKA
RKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKDTRYSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATF
YQNNCPGTKMDGDNDGIPCESQWCGH

Sequences:

>Translated_186_residues
MQRGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQQAGLARIEGVAIKPGSPIKA
RKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKDTRYSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATF
YQNNCPGTKMDGDNDGIPCESQWCGH
>Mature_186_residues
MQRGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQQAGLARIEGVAIKPGSPIKA
RKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKDTRYSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATF
YQNNCPGTKMDGDNDGIPCESQWCGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20516; Mature: 20516

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQ
CCCCCEEEEECCCCCEECCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCCHH
QAGLARIEGVAIKPGSPIKARKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKD
HCCHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TRYSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATFYQNNCPGTKMDGDNDGIPCE
CCCCCCCCCCCEECCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SQWCGH
CCCCCC
>Mature Secondary Structure
MQRGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQ
CCCCCEEEEECCCCCEECCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCCHH
QAGLARIEGVAIKPGSPIKARKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKD
HCCHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TRYSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATFYQNNCPGTKMDGDNDGIPCE
CCCCCCCCCCCEECCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SQWCGH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA