Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776237

Identifier: 119776237

GI number: 119776237

Start: 3678128

End: 3678778

Strand: Direct

Name: 119776237

Synonym: Sama_3105

Alternate gene names: NA

Gene position: 3678128-3678778 (Clockwise)

Preceding gene: 119776235

Following gene: 119776238

Centisome position: 85.42

GC content: 56.22

Gene sequence:

>651_bases
ATGACAGACTCCGCCCTGCTATACAGCTTTCGTCGCTGCCCCTACGCCATGCGCGCCCGTATGGCGCTGATATTATGCCA
ATTGCCCGTCAGGGTAAGAGAGGTCGCCCTCAAAGATAAGCCCGCCGAGTTACTGGCACTCAATCCCAGGGGCACGGTCC
CTGTATTGGTCAGCGGCGACACCCTGCTAACAGAAAGTCTCGATATTATGTTGTGGGCCACTGCGCAGTCCAGCCACCCT
TATGCGTCCAGACTCAAACAGCAAGTCCCCGCAGCACTGGCCCTGATAACAGTGAACGACGAGGGCTTTAAACCCTGGCT
CGACAAATACAAATACTTCGACCGCTATCCGCAATTCGACCAGAGCTACTACCGTGACAACGCCTGTGAATTTATTGCTG
ATCTCGATAACAGGCTGCGTCACAGCAGTATGTTGCTGGGTGAAGAGCCAAGCCTCGCGGACGTGGCAATTTTCCCCTTT
GTGCGGCAGTTTGCCGGTGTCGAGCCGGGCTGGCTCGCGGCCCGGTACCCCAAGGTCGCGCGCTGGCTGGATAAGCACTT
GGCATCAAAGGCATTCTCAGCTTGTATGTACAAGTATCCCCTGTACCAGCAGCAGGGCAACACTCTGCCTTTGGTGCTGG
CACAGGATTGA

Upstream 100 bases:

>100_bases
ACTCCAAAATACGCTGTAGAAAGCGATAAAAAACGGCAAAGCACCGCCGCAACCATGACCCGTGTTAAAGTGGGGCCAGA
TTCATTGCCAGCGTTTAAAC

Downstream 100 bases:

>100_bases
GTGGCGGTGTCACCGGCAGCAGCTGTAGCGGCGTTGCCATAGGCGAGTACATCAGGACAGGTAAAACAGACAGAGCAGAT
AAGAAGGCAGATGAAAACCG

Product: hypothetical protein

Products: NA

Alternate protein names: Glutathione S-Transferase; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase N Terminus; Glutathione S-Transferase N-Terminal Domain; Glutaredoxin; Glutathione-S-Transferase Domain-Containing Protein; Rhodanese Domain Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase Family Protein; Glutathione S-Transferase C-Terminal-Like Domain; Glutathione S-Transferase Domain; Glutathione-S-Transferase Domain Protein; Glutathione S-Transferase Omega Class; Rhodanese Domain-Containing Protein; Glutathione S-Transferase N-Terminal Domain Protein; Stringent Starvation Protein A; Glutathione S-Transferase N Terminal Domain Protein; GSH-Dependent Dehydroascorbate Reductase; Glutathione S-Transferase C-Terminal Domain Protein

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHP
YASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPF
VRQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD

Sequences:

>Translated_216_residues
MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHP
YASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPF
VRQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD
>Mature_215_residues
TDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHPY
ASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFV
RQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24628; Mature: 24497

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGD
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECC
TLLTESLDIMLWATAQSSHPYASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFD
EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHH
QSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFVRQFAGVEPGWLAARYPKVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD
HHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECC
>Mature Secondary Structure 
TDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGD
CCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECC
TLLTESLDIMLWATAQSSHPYASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFD
EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHH
QSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFVRQFAGVEPGWLAARYPKVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD
HHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA