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The map label for this gene is tolC [H]

Identifier: 119776180

GI number: 119776180

Start: 3625719

End: 3627017

Strand: Direct

Name: tolC [H]

Synonym: Sama_3048

Alternate gene names: 119776180

Gene position: 3625719-3627017 (Clockwise)

Preceding gene: 119776172

Following gene: 119776184

Centisome position: 84.2

GC content: 53.5

Gene sequence:

>1299_bases
ATGAAATTCAAGTTCAGCTCTCTGTGTGCCGCCATCGCTCTGGCAGCCAGTGCATCCAGCGTTCAAGCCGACGACTTGCT
GCAAATCTATCAGCAAGCTCTGACCAATGACCCTCTGGTGCTGCAGGCTCAGGCTCAGCGAAATGCGTTATACGCGCAAA
TCGAAGAAAACCGCGCTCCCCTGCTGCCCACCATCAGTGCCAATGTCGGTTACGATAAGGCCTGGAAAGACCCATCCGAA
GACTCCGATGGCTTTACCGGTGGCGTCAAATTAACTCAGGTGATTTATGACCACAGCGCCTGGGTTGGCCTGTCGCTGGC
AGAAAAAGCCGCAGCGCAAGCCGATGCCGCCTATGCATCCGCACTGCAAAACCTCATCACCCGTGTGACCAAGGCCTACT
TTGACGTGCTCAAGGCCAAGGATAACTATGAGTTCCAGGGCGCCGAGAAGCGCGCTATCGAGCGCCAGCTTGAGCAGACC
AAACAGCGTTTTGCCGTAGGTTTGACCGCCATGACGGATGTACACGAAGCACAGGCGCAATATGACCTGGCTTCAGCCAC
CGAAATTCTGGCTGAAAATACCCTGTCAAACAGCTATGAGGCGCTGCGTGAAATCACAGGTATCGACCATAAGTCTATCA
ACGTTCTGGACACCAATCGTTTCAGTGCTGCCGCCCCAGCGCCTGCCGCTCCCAATGAGTGGATCAAGATGGCAGAGAAC
AACAGTACAGACCTGCTGACTCAGCGCATTGGTAAAGACATCGCCGAAGAGACCATTTCCCTCTACAAAGCGGGTCACTA
CCCATCGTTAAGCTTGAGCGCAGGTTACACCAAGGGCTTTGAGCAGACCCCTGGTCCTGACTATGACAACAGCTCTATCG
GCGTGACTCTGTCTATCCCTATCTTTGAAGGCTTCAAAGTTACCTCCAAAGTAGAACAGGCCCAGTATAAGTATGTGGAA
GCCAGTGAGAAGCTAGAGCAGACTTATCGCCGCGTGGTGAAGGATGTACGTAACAACTTCAACAACGTTGGTGCCTCCAT
AAGCTCTATCCGTGCTTACGAGCAATCCGTGCTGTCTTCAGAAAGTGCGCTCGGTGCCACTCAGTCTGGTTTCGAAGTGG
GCACCCGTACCATAGTTGACGTGCTCAACCGTACCCGTGACCTCTACGACTCCAAACGTAAGCTGTCTGACGCGCGTTAC
AGCTACATCAGCTCGGTGCTGGCCCTGAAGCAAGCCGCAGGCACCCTGAACGAAGATGATGTGATTGCCATCAACAACGG
TTTGAAGGCTGCAGAGTAA

Upstream 100 bases:

>100_bases
CGGGAAGCGTCGGGAAGCGCGAACCGCCCGGGTATAAGGGCATACCAGTTTAACCCAGTTATTACCCCCCTCGGGGAGAA
TGTCTCAATAAGGACAGCCA

Downstream 100 bases:

>100_bases
TCACAACCAGTATAAAAAAACCGCCTGATGGCGGTTTTTTTATTGCGCTGATACTGACTTAGAAAAGCAGTTCCACACCG
GCAAAATAGCCTTTGAAGCT

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAPLLPTISANVGYDKAWKDPSE
DSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYASALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAMTDVHEAQAQYDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN
NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPGPDYDNSSIGVTLSIPIFEGFKVTSKVEQAQYKYVE
ASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQSVLSSESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARY
SYISSVLALKQAAGTLNEDDVIAINNGLKAAE

Sequences:

>Translated_432_residues
MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAPLLPTISANVGYDKAWKDPSE
DSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYASALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAMTDVHEAQAQYDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN
NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPGPDYDNSSIGVTLSIPIFEGFKVTSKVEQAQYKYVE
ASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQSVLSSESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARY
SYISSVLALKQAAGTLNEDDVIAINNGLKAAE
>Mature_432_residues
MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAPLLPTISANVGYDKAWKDPSE
DSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYASALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAMTDVHEAQAQYDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN
NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPGPDYDNSSIGVTLSIPIFEGFKVTSKVEQAQYKYVE
ASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQSVLSSESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARY
SYISSVLALKQAAGTLNEDDVIAINNGLKAAE

Specific function: May be specialized for signal sequence independent, extracellular secretion in Gram-negative bacteria [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=425, Percent_Identity=43.2941176470588, Blast_Score=330, Evalue=8e-92,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47152; Mature: 47152

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAP
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECHHCCCEEEEECCCCCC
LLPTISANVGYDKAWKDPSEDSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYAS
CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAMTDVHEAQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCC
NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPGPDYDNSSIGVTLSIP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
IFEGFKVTSKVEQAQYKYVEASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQSVLSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYISSVLALKQAAGTLNEDD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VIAINNGLKAAE
EEEECCCCCCCC
>Mature Secondary Structure
MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAP
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECHHCCCEEEEECCCCCC
LLPTISANVGYDKAWKDPSEDSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYAS
CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAMTDVHEAQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCC
NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPGPDYDNSSIGVTLSIP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
IFEGFKVTSKVEQAQYKYVEASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQSVLSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYISSVLALKQAAGTLNEDD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VIAINNGLKAAE
EEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]