| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bfd [C]
Identifier: 119776172
GI number: 119776172
Start: 3617252
End: 3617443
Strand: Direct
Name: bfd [C]
Synonym: Sama_3040
Alternate gene names: 119776172
Gene position: 3617252-3617443 (Clockwise)
Preceding gene: 119776171
Following gene: 119776180
Centisome position: 84.0
GC content: 51.56
Gene sequence:
>192_bases ATGTATGTCTGTGTTTGTTATGCCGTGACAGATACCCAAATCCAGGAAGCCGTTCATCAGGGCGATATTACCTTGGCCGC GGTGAAAAAACGCCTGGGTGTTGGCAGCCAGTGTGGTAAATGCATTCAAACGACCCTCGAAGTGATTCAGCGCCAGCTGG ACGTCGAGCCCAATTACTACGAAGTCGCCTGA
Upstream 100 bases:
>100_bases TAAGTGAGAAATAGCTCACCTATATAAAAAAGCGTTATTGATGATGAGAACGGTTTTTATTTATAATCCACATCATTCAA CCGCCGGAGCATTTTTCACC
Downstream 100 bases:
>100_bases TACGGCATACTTTTCTCTCACTCAAGCAGCTGACCCCAAACGGCGCAAGGTAAGGTTTAGCTGCGCAGTCTGCGACTCAG ATTCAAATAAAAAAGCACTG
Product: bacterioferritin-associated ferredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 63; Mature: 63
Protein sequence:
>63_residues MYVCVCYAVTDTQIQEAVHQGDITLAAVKKRLGVGSQCGKCIQTTLEVIQRQLDVEPNYYEVA
Sequences:
>Translated_63_residues MYVCVCYAVTDTQIQEAVHQGDITLAAVKKRLGVGSQCGKCIQTTLEVIQRQLDVEPNYYEVA >Mature_63_residues MYVCVCYAVTDTQIQEAVHQGDITLAAVKKRLGVGSQCGKCIQTTLEVIQRQLDVEPNYYEVA
Specific function: Seems To Associate With Bfr; Could Be A General Redox And/Or Regulatory Component Participating In The Iron Storage Mobilization Functions Of Bfr. Could Participate In The Release Or The Delivery Of Iron From/To Bacterioferritin (Or Other Iron Complexes)
COG id: COG2906
COG function: function code P; Bacterioferritin-associated ferredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6992; Mature: 6992
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 6.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVCVCYAVTDTQIQEAVHQGDITLAAVKKRLGVGSQCGKCIQTTLEVIQRQLDVEPNYY CEEEEEEEECHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEE EVA ECC >Mature Secondary Structure MYVCVCYAVTDTQIQEAVHQGDITLAAVKKRLGVGSQCGKCIQTTLEVIQRQLDVEPNYY CEEEEEEEECHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEE EVA ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA