| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is mlhB [H]
Identifier: 119776144
GI number: 119776144
Start: 3585475
End: 3586386
Strand: Reverse
Name: mlhB [H]
Synonym: Sama_3012
Alternate gene names: 119776144
Gene position: 3586386-3585475 (Counterclockwise)
Preceding gene: 119776145
Following gene: 119776143
Centisome position: 83.29
GC content: 57.13
Gene sequence:
>912_bases ATGGCTAGTTGGCAGGCAAAGGTGCTTAACAGTGTGCTTTCTTACATTGCCAAACCCGGAATGCACGCCCGGGGCGCCCG TTTGTCACTGGCCGATATTCGCAGGCGGCTTGAAGCCCTGGACAGCCGCTATCTTAGCTGGCCCAAAGGGCTTATCAGTG ACAATTTGCCCCTCTCCCACAGCGCCTTAATCCATAATCATCTGGAATCCGCTGCGGCACAACGCCCCCGGCTCGCCATC TTTTACGTGCGTGGAGGGGGATTTTGTTTTAAAACCCCCAACGCCCATGGCCGCTTTATCGCAGATCTGTGTCGTGAGCT GGATGCCGATGCCTATGTCCCCGATTATCGGCTGGCACCAGAACACCCGTTTCCTGCCCCCCTGGAAGATGTGCTGGACG GGTATCAGCAATTTCTGTCGCTTTGGTCAGACCCCTTTGTGGTGATGGGTGACAGCGCCGGTGGTAATCTTGCCATGGCT TTGCTGCTGCAAGTCAAAGATATGGGGCTCAGATTGCCCGAATGTGCGGTGCTGCTCAGCCCCGCGCTGGACCTTGGGAT CACAGGTGACAGTGAACGGCTGCTCAGTGCAGACGATCCCTTCTTCAGTATCGACTCCCTGCTCAGGCTTAGGGGGGCCT ATCTTCAGGGCGCCAATCCCATGGATGTCCGGGCAAGTCCATTGCATGGTGATTTACGGGGCCTTCCGTCCATGCTGCTG CTTGCGGGCACGCGGGAGCTCCTTTTGGAGGATTCACAGCGCCTTGCACAAAGGCTGAAGGAAGCGGGAACCCATGTGGA ACATCACTTTCTGGCGCACATGCCCCATGTGTTTCCGCTGTTTGAAATGCTGCCCGAAGCCAGGGAAGCGAGGGAACTCA TCCTCGAATTTATCCGGCGGCGCCTGATGTGA
Upstream 100 bases:
>100_bases CTTGAAGGCGCAAAATTACCGCAGAATGGAACTCTTCTGAAACGCGTTGTTCGGGGCGTTAGCCGAACATCCGGCAAAGC AGTACAAGCAGGAGCTCAGT
Downstream 100 bases:
>100_bases ATAATATGTCTATTTATCCAATATTCTATGCATTGTCTGAAAATTTGCCGGTAAATAAGATTTTTTCTGACTAAATATGC CATTATCCCCCGCATATAGC
Product: esterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSHSALIHNHLESAAAQRPRLAI FYVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAPEHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMA LLLQVKDMGLRLPECAVLLSPALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLL LAGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRRRLM
Sequences:
>Translated_303_residues MASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSHSALIHNHLESAAAQRPRLAI FYVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAPEHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMA LLLQVKDMGLRLPECAVLLSPALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLL LAGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRRRLM >Mature_302_residues ASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSHSALIHNHLESAAAQRPRLAIF YVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAPEHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMAL LLQVKDMGLRLPECAVLLSPALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLLL AGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRRRLM
Specific function: Lactone hydrolase that is required for the degradation of monocyclic monoterpenes such as menthol and carvone. Catalyzes the ring opening of lactones formed during degradation of monocyclic monoterpenes. Can hydrolyze epsilon-caprolactone, the lactone der
COG id: COG0657
COG function: function code I; Esterase/lipase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'GDXG' lipolytic enzyme family [H]
Homologues:
Organism=Homo sapiens, GI21328446, Length=185, Percent_Identity=33.5135135135135, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115533410, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533412, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24656084, Length=141, Percent_Identity=30.4964539007092, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24656076, Length=141, Percent_Identity=30.4964539007092, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI20130169, Length=141, Percent_Identity=30.4964539007092, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013094 [H]
Pfam domain/function: PF07859 Abhydrolase_3 [H]
EC number: =3.1.1.83 [H]
Molecular weight: Translated: 33788; Mature: 33656
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSH CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCH SALIHNHLESAAAQRPRLAIFYVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAP HHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC EHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMALLLQVKDMGLRLPECAVLLS CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH PALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH LAGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRR HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH RLM HCC >Mature Secondary Structure ASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSH CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCH SALIHNHLESAAAQRPRLAIFYVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAP HHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC EHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMALLLQVKDMGLRLPECAVLLS CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH PALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH LAGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRR HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH RLM HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA