| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776145
Identifier: 119776145
GI number: 119776145
Start: 3586447
End: 3587643
Strand: Reverse
Name: 119776145
Synonym: Sama_3013
Alternate gene names: NA
Gene position: 3587643-3586447 (Counterclockwise)
Preceding gene: 119776146
Following gene: 119776144
Centisome position: 83.31
GC content: 53.55
Gene sequence:
>1197_bases ATGCTAAAAATGACAGGTGAAATCGGCTTTATACACCAGCGGGAGTATACAGAGGTGGCTATTGGCGCAACGGGCGGAGT TAAGCCCGGCAGTATTCTGGCATTGGAGCGGCGTTTATACCGGCAGTTGATTGTCGGTAAGCAGAAAATGCCCAGAATTC AGGATGAGTTGGATCGGGAACTCGAATCCGTTGTCTTCAAGCTGGATATCGAGCGTGCCGCCGTTTTTGAGCGCATCGAG CGGCAGCAAAAGGCCCGTGAAGTGTTCGAAGCCGTATCCAAACAGCTCACCGATACCATCATGGATGAGATAAAGCTGAC ACTCGGCGATATGGACAGATTGCTGCAGCGTTCCAGTCTGACCGAGACTCAGCTCGCGCTGTTTGAACAACTCTGCAAAG CTAACCCGGAACTTGGCCGTATTCGCCTGCTCATGAGCGGTATTGGCTGGTTATCCCGTGACTTGACCAATGTGGTCAAC AGCACCGCATTTCGCCAGCGTCATCCCCAGCGCGCCGATGTACGGGTGACCGATATCAAGCTGGTGCTCAACTTTATCGG GGTGGAAAACCTGCGTCAGTTGGTGCCTTATTACAGCATGCGCAACTGGTTGCCCTCGGGCCATTCCTGTCTGCTGTGGC CCAATCGCAAGCTATGGCAATATGCGCTGGCCTGTGCCACTGCCGCCAAAGCCCTGGCCAAACTCCATGAATCCAATGAA ACTCTGGCATTTATCAGCGCCTTCCTCGAGCAGTTTGGTATTACCATGGTGCTCGGTACTGCATCTGCCATTTATGAAAA AAATTGGGGCAATTGGCTCCGGGAGGCCAGTGCCAGTCGGGACAAGGAACTCTATGATGCGGTCATGGCCACCGAGTTTC CCGCGGAAAAGGTACTGGAAGAGGTGCTGCTCCATTCCAGCAGGCTCGCCTGGGAAATTCCGGCCAGGCTGAACTTTGCC GACCATGCTCTGACGCTGAATCTCAAGGCGTTGGATGAATCCCTCACTGTCACCGATATGCCCATGGATGCCCAAATTCT GGCCAAGGCCACGTGTTTCGTCAGGGTGATGACGCTGGAAGAGAGCAATTTGCTCGAACCCCAGGAGGCTCGGGAAATGT ACCGTTACTATGGTCTCAGTGAGCAGGAAATACTGCGCTTGAAGGCGCAAAATTACCGCAGAATGGAACTCTTCTGA
Upstream 100 bases:
>100_bases ACGGTCGTTAAACTCAGGGCCTGCGGGCCCTGTTTTTTATTGAAAATTGGTCGCCTGTCAGTAAGTTGGCAAAATATCAG TCTCTCTCCTTGGCCGATTT
Downstream 100 bases:
>100_bases AACGCGTTGTTCGGGGCGTTAGCCGAACATCCGGCAAAGCAGTACAAGCAGGAGCTCAGTATGGCTAGTTGGCAGGCAAA GGTGCTTAACAGTGTGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: HD Superfamily Hydrolase; Metal-Dependent Hydrolase HDOD
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MLKMTGEIGFIHQREYTEVAIGATGGVKPGSILALERRLYRQLIVGKQKMPRIQDELDRELESVVFKLDIERAAVFERIE RQQKAREVFEAVSKQLTDTIMDEIKLTLGDMDRLLQRSSLTETQLALFEQLCKANPELGRIRLLMSGIGWLSRDLTNVVN STAFRQRHPQRADVRVTDIKLVLNFIGVENLRQLVPYYSMRNWLPSGHSCLLWPNRKLWQYALACATAAKALAKLHESNE TLAFISAFLEQFGITMVLGTASAIYEKNWGNWLREASASRDKELYDAVMATEFPAEKVLEEVLLHSSRLAWEIPARLNFA DHALTLNLKALDESLTVTDMPMDAQILAKATCFVRVMTLEESNLLEPQEAREMYRYYGLSEQEILRLKAQNYRRMELF
Sequences:
>Translated_398_residues MLKMTGEIGFIHQREYTEVAIGATGGVKPGSILALERRLYRQLIVGKQKMPRIQDELDRELESVVFKLDIERAAVFERIE RQQKAREVFEAVSKQLTDTIMDEIKLTLGDMDRLLQRSSLTETQLALFEQLCKANPELGRIRLLMSGIGWLSRDLTNVVN STAFRQRHPQRADVRVTDIKLVLNFIGVENLRQLVPYYSMRNWLPSGHSCLLWPNRKLWQYALACATAAKALAKLHESNE TLAFISAFLEQFGITMVLGTASAIYEKNWGNWLREASASRDKELYDAVMATEFPAEKVLEEVLLHSSRLAWEIPARLNFA DHALTLNLKALDESLTVTDMPMDAQILAKATCFVRVMTLEESNLLEPQEAREMYRYYGLSEQEILRLKAQNYRRMELF >Mature_398_residues MLKMTGEIGFIHQREYTEVAIGATGGVKPGSILALERRLYRQLIVGKQKMPRIQDELDRELESVVFKLDIERAAVFERIE RQQKAREVFEAVSKQLTDTIMDEIKLTLGDMDRLLQRSSLTETQLALFEQLCKANPELGRIRLLMSGIGWLSRDLTNVVN STAFRQRHPQRADVRVTDIKLVLNFIGVENLRQLVPYYSMRNWLPSGHSCLLWPNRKLWQYALACATAAKALAKLHESNE TLAFISAFLEQFGITMVLGTASAIYEKNWGNWLREASASRDKELYDAVMATEFPAEKVLEEVLLHSSRLAWEIPARLNFA DHALTLNLKALDESLTVTDMPMDAQILAKATCFVRVMTLEESNLLEPQEAREMYRYYGLSEQEILRLKAQNYRRMELF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45735; Mature: 45735
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKMTGEIGFIHQREYTEVAIGATGGVKPGSILALERRLYRQLIVGKQKMPRIQDELDRE CCEECCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LESVVFKLDIERAAVFERIERQQKAREVFEAVSKQLTDTIMDEIKLTLGDMDRLLQRSSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TETQLALFEQLCKANPELGRIRLLMSGIGWLSRDLTNVVNSTAFRQRHPQRADVRVTDIK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH LVLNFIGVENLRQLVPYYSMRNWLPSGHSCLLWPNRKLWQYALACATAAKALAKLHESNE HHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC TLAFISAFLEQFGITMVLGTASAIYEKNWGNWLREASASRDKELYDAVMATEFPAEKVLE HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH EVLLHSSRLAWEIPARLNFADHALTLNLKALDESLTVTDMPMDAQILAKATCFVRVMTLE HHHHHCCCCEEECCCCCCCCCCEEEEEHHHHCCCCEEECCCCCHHHHHHHHHHHEEEEEC ESNLLEPQEAREMYRYYGLSEQEILRLKAQNYRRMELF CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLKMTGEIGFIHQREYTEVAIGATGGVKPGSILALERRLYRQLIVGKQKMPRIQDELDRE CCEECCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LESVVFKLDIERAAVFERIERQQKAREVFEAVSKQLTDTIMDEIKLTLGDMDRLLQRSSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TETQLALFEQLCKANPELGRIRLLMSGIGWLSRDLTNVVNSTAFRQRHPQRADVRVTDIK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH LVLNFIGVENLRQLVPYYSMRNWLPSGHSCLLWPNRKLWQYALACATAAKALAKLHESNE HHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC TLAFISAFLEQFGITMVLGTASAIYEKNWGNWLREASASRDKELYDAVMATEFPAEKVLE HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH EVLLHSSRLAWEIPARLNFADHALTLNLKALDESLTVTDMPMDAQILAKATCFVRVMTLE HHHHHCCCCEEECCCCCCCCCCEEEEEHHHHCCCCEEECCCCCHHHHHHHHHHHEEEEEC ESNLLEPQEAREMYRYYGLSEQEILRLKAQNYRRMELF CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA