Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776079

Identifier: 119776079

GI number: 119776079

Start: 3502876

End: 3504378

Strand: Direct

Name: 119776079

Synonym: Sama_2947

Alternate gene names: NA

Gene position: 3502876-3504378 (Clockwise)

Preceding gene: 119776078

Following gene: 119776081

Centisome position: 81.35

GC content: 53.49

Gene sequence:

>1503_bases
ATGAAATCACAAGCGAAGAAGTCACTCTTGGCTTTAGCCATCACCGCGGGTATCGGCATGTCAGCGCAGGCCTTTGCCAG
CGATATCAGCGAAATCCAGGTAAACCAGTCCGGCTATGGTAACGACACCACTGTGGAACAAACAGGTGTACTGAACCTGG
CGCAGGTTGATCAACTGGGCGATGAAAACACCACCACAGTAACCCAGGACGGTGTATGGAACGAAGCCTTTGTGGATTCT
GAGGGCAACCAGAATAGCGTGTCTGTTGAGCAAGCCGAAGACTGGCACATTGCCGGCGTGAGCCAAACCGGTGATAACAA
CACGGATAACGTGGTCCAGACAGGCTTCTTCAACCAGAGTGACGCGGTAACTGCCGGTAACGGAAACGCCGTTGACGTGA
TGCAGGCAGGTGATCAGAACGCAAGCAATGTAGAACTGACCGGCGACAACAACAGCGCCTGGGTTGATCAGGACGGCAGC
AGCAACTATGCCGTTTTCCGTGTTCAGGGCAATGATAACGACGGTGAAATCACTCAGCTGGGTAACAACAACCAGGGTGG
TCTGATTGCTCTGGACTTCACTGCCAACGTTGGCAACAACAACGATGTCTCCATCTATCAGGAAGGTGACGACAACGTGG
GTGGTGTGCGCGGCGTTGCCGGTGACAACAACGAAGTTGAGATTGAGCAGGTTGGTAACAACAACGTGGGCTTTGTTTAC
GCCCTGCAAGGCAGCAACAACGATCTGACCATGACCCAGGATGGCGATCGCAACGTGGCGGTGCTGGAATTCACCACCGG
TGACAACAACGACGTTGAAATTAACCAATCTGGCTCCGAAAACGCCATCGGCGATAGCCTGATAGCGGTTATCGAAGGCA
GCGACAACATGATAGACATCGAGCAGGAAGGCTTCTCCAACAGCGCTCAGTTTATCGTTGATGGCGACGATAACGATGTG
GATCTGGAGCAGGAAGGCGATCTGAACTATGCCGAATTTGTTGCTGTTGGCAATGACAACACCCTGAACCTGAGTTCAGA
AGGTAACGGCAACCAGCTGCTGGCCGGTGCCTTTGGCGAAGACAACAGCCTCGAAGTGGCTCAGGAAGGCGATGTCAACT
ATGCATACAGCGTTGCATTTGGTAACGACAACGAGGTGGATATTGCGCAAATGGGCAATGACAACGAAGCCATTGTCACC
ATCGAAGGCAACAACAACACCGACATCATAGGTACCCAGTCTGGCGACCTCAACGTACTGGACCTGCTGATCCAGGGCGA
TGAAAACCTGGCACAAATCACCCAGACCGGTAACGGCAACTGGGTAGGTGGCGATGCCGGTGCATTCGCAGTGGTTGGCG
AAGGCAATAGCTTCATCGTGGCTCAAAGCGGCAACGACAACCTGGTGACCGGCGCTCAGATGGGCAGCAGCAACGTGATC
AACGTGACTCAAGTGGGTAACGAAAACGTAGCGACTGTTATCCAGAACGGCGCGCCACGCTGA

Upstream 100 bases:

>100_bases
CTGGTGCAGCTCAAGCAGTTGGGCAGTGCGAATTTTTCTATTCAACAAATTGGCGATGGAGCATCTATCGCCGTGACTCA
ATATTAACAGGGAGCGTCAC

Downstream 100 bases:

>100_bases
TAACAGCACCCCGATAAAAAAGGAGCCATCTGGCTCCTTTTTTATTGACGTTTTTTATCTTGGGTTACCGCGGTGAAACA
CTCAGATTTAAGCGGTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted Subunit Of Curlin May Bind Calcium; Curlin Associated Repeat Protein; Curlin

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MKSQAKKSLLALAITAGIGMSAQAFASDISEIQVNQSGYGNDTTVEQTGVLNLAQVDQLGDENTTTVTQDGVWNEAFVDS
EGNQNSVSVEQAEDWHIAGVSQTGDNNTDNVVQTGFFNQSDAVTAGNGNAVDVMQAGDQNASNVELTGDNNSAWVDQDGS
SNYAVFRVQGNDNDGEITQLGNNNQGGLIALDFTANVGNNNDVSIYQEGDDNVGGVRGVAGDNNEVEIEQVGNNNVGFVY
ALQGSNNDLTMTQDGDRNVAVLEFTTGDNNDVEINQSGSENAIGDSLIAVIEGSDNMIDIEQEGFSNSAQFIVDGDDNDV
DLEQEGDLNYAEFVAVGNDNTLNLSSEGNGNQLLAGAFGEDNSLEVAQEGDVNYAYSVAFGNDNEVDIAQMGNDNEAIVT
IEGNNNTDIIGTQSGDLNVLDLLIQGDENLAQITQTGNGNWVGGDAGAFAVVGEGNSFIVAQSGNDNLVTGAQMGSSNVI
NVTQVGNENVATVIQNGAPR

Sequences:

>Translated_500_residues
MKSQAKKSLLALAITAGIGMSAQAFASDISEIQVNQSGYGNDTTVEQTGVLNLAQVDQLGDENTTTVTQDGVWNEAFVDS
EGNQNSVSVEQAEDWHIAGVSQTGDNNTDNVVQTGFFNQSDAVTAGNGNAVDVMQAGDQNASNVELTGDNNSAWVDQDGS
SNYAVFRVQGNDNDGEITQLGNNNQGGLIALDFTANVGNNNDVSIYQEGDDNVGGVRGVAGDNNEVEIEQVGNNNVGFVY
ALQGSNNDLTMTQDGDRNVAVLEFTTGDNNDVEINQSGSENAIGDSLIAVIEGSDNMIDIEQEGFSNSAQFIVDGDDNDV
DLEQEGDLNYAEFVAVGNDNTLNLSSEGNGNQLLAGAFGEDNSLEVAQEGDVNYAYSVAFGNDNEVDIAQMGNDNEAIVT
IEGNNNTDIIGTQSGDLNVLDLLIQGDENLAQITQTGNGNWVGGDAGAFAVVGEGNSFIVAQSGNDNLVTGAQMGSSNVI
NVTQVGNENVATVIQNGAPR
>Mature_500_residues
MKSQAKKSLLALAITAGIGMSAQAFASDISEIQVNQSGYGNDTTVEQTGVLNLAQVDQLGDENTTTVTQDGVWNEAFVDS
EGNQNSVSVEQAEDWHIAGVSQTGDNNTDNVVQTGFFNQSDAVTAGNGNAVDVMQAGDQNASNVELTGDNNSAWVDQDGS
SNYAVFRVQGNDNDGEITQLGNNNQGGLIALDFTANVGNNNDVSIYQEGDDNVGGVRGVAGDNNEVEIEQVGNNNVGFVY
ALQGSNNDLTMTQDGDRNVAVLEFTTGDNNDVEINQSGSENAIGDSLIAVIEGSDNMIDIEQEGFSNSAQFIVDGDDNDV
DLEQEGDLNYAEFVAVGNDNTLNLSSEGNGNQLLAGAFGEDNSLEVAQEGDVNYAYSVAFGNDNEVDIAQMGNDNEAIVT
IEGNNNTDIIGTQSGDLNVLDLLIQGDENLAQITQTGNGNWVGGDAGAFAVVGEGNSFIVAQSGNDNLVTGAQMGSSNVI
NVTQVGNENVATVIQNGAPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52151; Mature: 52151

Theoretical pI: Translated: 3.06; Mature: 3.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQAKKSLLALAITAGIGMSAQAFASDISEIQVNQSGYGNDTTVEQTGVLNLAQVDQLG
CCCHHHHHEEEEEEECCCCCCHHHHHCCCCEEEECCCCCCCCCEEECCCCEEHHHHHHCC
DENTTTVTQDGVWNEAFVDSEGNQNSVSVEQAEDWHIAGVSQTGDNNTDNVVQTGFFNQS
CCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEECCCCCC
DAVTAGNGNAVDVMQAGDQNASNVELTGDNNSAWVDQDGSSNYAVFRVQGNDNDGEITQL
CEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCEEEEC
GNNNQGGLIALDFTANVGNNNDVSIYQEGDDNVGGVRGVAGDNNEVEIEQVGNNNVGFVY
CCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEE
ALQGSNNDLTMTQDGDRNVAVLEFTTGDNNDVEINQSGSENAIGDSLIAVIEGSDNMIDI
EEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCEEEE
EQEGFSNSAQFIVDGDDNDVDLEQEGDLNYAEFVAVGNDNTLNLSSEGNGNQLLAGAFGE
ECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCEEEEEECCC
DNSLEVAQEGDVNYAYSVAFGNDNEVDIAQMGNDNEAIVTIEGNNNTDIIGTQSGDLNVL
CCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEE
DLLIQGDENLAQITQTGNGNWVGGDAGAFAVVGEGNSFIVAQSGNDNLVTGAQMGSSNVI
EEEEECCCCCEEEEECCCCCEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
NVTQVGNENVATVIQNGAPR
EEEEECCCCEEEEEECCCCC
>Mature Secondary Structure
MKSQAKKSLLALAITAGIGMSAQAFASDISEIQVNQSGYGNDTTVEQTGVLNLAQVDQLG
CCCHHHHHEEEEEEECCCCCCHHHHHCCCCEEEECCCCCCCCCEEECCCCEEHHHHHHCC
DENTTTVTQDGVWNEAFVDSEGNQNSVSVEQAEDWHIAGVSQTGDNNTDNVVQTGFFNQS
CCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEECCCCCC
DAVTAGNGNAVDVMQAGDQNASNVELTGDNNSAWVDQDGSSNYAVFRVQGNDNDGEITQL
CEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCEEEEC
GNNNQGGLIALDFTANVGNNNDVSIYQEGDDNVGGVRGVAGDNNEVEIEQVGNNNVGFVY
CCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEE
ALQGSNNDLTMTQDGDRNVAVLEFTTGDNNDVEINQSGSENAIGDSLIAVIEGSDNMIDI
EEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCEEEE
EQEGFSNSAQFIVDGDDNDVDLEQEGDLNYAEFVAVGNDNTLNLSSEGNGNQLLAGAFGE
ECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCEEEEEECCC
DNSLEVAQEGDVNYAYSVAFGNDNEVDIAQMGNDNEAIVTIEGNNNTDIIGTQSGDLNVL
CCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEE
DLLIQGDENLAQITQTGNGNWVGGDAGAFAVVGEGNSFIVAQSGNDNLVTGAQMGSSNVI
EEEEECCCCCEEEEECCCCCEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
NVTQVGNENVATVIQNGAPR
EEEEECCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA