| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776045
Identifier: 119776045
GI number: 119776045
Start: 3462367
End: 3463845
Strand: Direct
Name: 119776045
Synonym: Sama_2913
Alternate gene names: NA
Gene position: 3462367-3463845 (Clockwise)
Preceding gene: 119776044
Following gene: 119776046
Centisome position: 80.41
GC content: 56.46
Gene sequence:
>1479_bases GTGAGTGCTACTGCCGAGAACTGGCAAAGCCTGTCGCCCTGGTCTGTAGTCAGCTTTACCCTGGGCACGGCGCGCCAGGT ACTGACCCAGGGCTATGCCCTTATCCCCATCGTCTTTACCGGCTGGAAACAGGGGTTCGACTCACCGCTGGTCATTTCCG TGGCCTTATTGGTGCTGCTGGGCATTCTCACCTTCGCCCTGGTGCAATATGCCACCTACAGGTTCCGCCCCGGCAGCCAT AAACTGGAAGTGCGCCGGGGGCTGTTTTTCAAACGCAAAGATGAATTGCCGCTGGATAAAATTCAGAACGTGCGACTCGA CCAACCCTTTTACTTTAAACCTCTCTTACTCTGCACCCTGGTAGTCGAGACCGCAGGCTCCCGTAAAGATGAGGTGCAAA TTGCCGCCATGCCCCTGAGCAATGCCATGGCCCTCAAGTCGCATTTGCTGCAAAAGCCTGCCGAACCTGTTAACCATCAC GAGGAACAAACGGACTCACTGCTGCTTGAAAGAGGCGGCAAGCCACTGTTTTTATTTGGGCTTTACCACAACAACTTTGT CTGGTTTATGGTCTTCGCCGGCTCTATCATGGGGCAGCTGCCGGTGGAGAGCTGGTTCGAATCCCTTGGCCTTAACACCT TTGTGCGTATCGAATCCCAGGGGCCGCTGTGGGGCACCTTAAGTGTGATAGCACTGATTTTGCTGGGATATATCTGTTTT GCGCTCATTTCAGTGCTGTTTGCCTTTTTGAAATACTACCCCTACCGACTAAAGCTTGGCGCCGAGTCCACCCTGGAGCG CACGGGCGGCATATTGGCCCACCAGCAGGATGCGCTGGCGATGAAACGCATTCAACTGGTGGAATTCAATCAACCCCCCA TTGCACGGCTGCTGAAGCGCTGGACGGTGTTTTTCCGTCAGGTTCAGGGCCATGAGGTTGAACAACACCTCAAGCTGCCA CTGCTTATCCCCTCTGTGACTCCCGATGAGCTCCCGCCCCTGTTTGCCCAGCTCAAGGCGCTGCCCGGCCAAGACAGCCT GCCGCCACAGGTGCATGAACTGCGCCCCATCCACAATGGCTGGCTGAAACGCAGACTCGCATTTGTCTGGCTTCCGGCGC TGCTGACGATGCTGATTTCCCGGGAGCTGGTTGTTATCGAGCTCGCCCTGACCGTGGCCATACTGGGCTCGGTCGGACTT TGGCTCAGGTTCAAACACTGGGGCTACCGGCACGACGATACCCTGGTGTGGCAACGCACCGGCCTGCTTGGCCAAAGTAT CAAAAGAGTGCCCCTGTACAAGGTGCAACACGTGAGTCTGCTTCAATCGCCCGGGCAACGGAAAAAAGGCTTGGCGACCC TGGAGCTCGGGCTTGCCAGCGGTAAGATTTTCCTGCCCTGGATCCCCTACAGCGAGGCCAGGACCATTGCTCTGGCCGCA CTGACACAGCTGGACAAGCACAGAGGTAACTGGATTTAA
Upstream 100 bases:
>100_bases CTGGCAGCGGAAACGCTGAAATTGAAATTCGTGGCCTGCCCATCGACGATGCGGAGGCGCTGCGGGGCCACCTGCTCGCC CGTGCTGGAGTAACTGAACT
Downstream 100 bases:
>100_bases CCGGAGCACAAATGACGCATTGGCAGCAAATCATCGATTTTTGGTTCAGCGAAATCAGCCCCAAACAATGGTGGCAAAAG GATGCTGACTTTGACCATCT
Product: membrane protein
Products: NA
Alternate protein names: Stress Protein; Bacterial Membrane Flanked Domain Family; Serine/Threonine Protein Kinase; Membrane-Flanked Domain Protein
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSH KLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHH EEQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLP LLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGL WLRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA LTQLDKHRGNWI
Sequences:
>Translated_492_residues MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSH KLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHH EEQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLP LLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGL WLRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA LTQLDKHRGNWI >Mature_491_residues SATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSHK LEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHE EQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICFA LISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLPL LIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLW LRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAAL TQLDKHRGNWI
Specific function: Unknown
COG id: COG3428
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55721; Mature: 55590
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH GILTFALVQYATYRFRPGSHKLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTL HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCCCCHHHHCCCCCCCCCHHHHHHHHHH VVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHEEQTDSLLLERGGKPLFLFG HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCEEEEEE LYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF EECCCEEEEHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKR HHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHEEECCCCHHHHHHHH WTVFFRQVQGHEVEQHLKLPLLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNG HHHHHHHHCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHH WLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLWLRFKHWGYRHDDTLVWQRT HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEHH GLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA CHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHH LTQLDKHRGNWI HHHHHHHCCCCC >Mature Secondary Structure SATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH GILTFALVQYATYRFRPGSHKLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTL HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCCCCHHHHCCCCCCCCCHHHHHHHHHH VVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHEEQTDSLLLERGGKPLFLFG HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCEEEEEE LYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF EECCCEEEEHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKR HHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHEEECCCCHHHHHHHH WTVFFRQVQGHEVEQHLKLPLLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNG HHHHHHHHCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHH WLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLWLRFKHWGYRHDDTLVWQRT HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEHH GLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA CHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHH LTQLDKHRGNWI HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA