Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776044

Identifier: 119776044

GI number: 119776044

Start: 3461840

End: 3462370

Strand: Direct

Name: 119776044

Synonym: Sama_2912

Alternate gene names: NA

Gene position: 3461840-3462370 (Clockwise)

Preceding gene: 119776041

Following gene: 119776045

Centisome position: 80.39

GC content: 59.89

Gene sequence:

>531_bases
ATGCAGGCACAAGATGCTGAATTACAAGGGCTCTTGTTACCCCGGGATCGCTGGACTCCCTTCGAAGCCGCCGTGCTCAT
CCCGGCCGATCCCCGCTATGCCACCCTGCTGATGGTCACCACGGCCATGATATTTTTATTAATATTCCTGCCTCTGTCAT
TGCTGCTTATCTTTGCCGGAGTGCCCGACATGATAGTGCTGGCGATCAGCAGCATTGGCGTATCGCTGGCAGGCCTCAGC
CTGTGGCTGGGTCATCGCTGGGCCAATGCTCTGGGGTACGGCGTTGGCGAGCTGGACCTGCTCAGCCAAACCGGCGTGTG
GTGGCAAAAGCGAACCGCCATGCCTTACAGCCGTATCCAGCACGTCACCCTGTCACAGGGACCCTTGGAGCGGCGCTACG
GCCTCGCCTGCGTCAAGTGTTTCAGCGCTGGCAGCGGAAACGCTGAAATTGAAATTCGTGGCCTGCCCATCGACGATGCG
GAGGCGCTGCGGGGCCACCTGCTCGCCCGTGCTGGAGTAACTGAACTGTGA

Upstream 100 bases:

>100_bases
TGAGACGGCTTTGCAAGCAAATATTTCCATTGGCTGGATCCTCGCAACTTTTCACTGCTATATTGGCCGTGAATACAAAA
ATGTCACAAGGACGACACAA

Downstream 100 bases:

>100_bases
GTGCTACTGCCGAGAACTGGCAAAGCCTGTCGCCCTGGTCTGTAGTCAGCTTTACCCTGGGCACGGCGCGCCAGGTACTG
ACCCAGGGCTATGCCCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-Flanked Domain Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS
LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA
EALRGHLLARAGVTEL

Sequences:

>Translated_176_residues
MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS
LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA
EALRGHLLARAGVTEL
>Mature_176_residues
MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS
LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA
EALRGHLLARAGVTEL

Specific function: Unknown

COG id: COG3402

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19182; Mature: 19182

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAG
CCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPDMIVLAISSIGVSLAGLSLWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQ
CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCHHHHE
HVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDAEALRGHLLARAGVTEL
EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAG
CCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPDMIVLAISSIGVSLAGLSLWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQ
CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCHHHHE
HVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDAEALRGHLLARAGVTEL
EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA