| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776044
Identifier: 119776044
GI number: 119776044
Start: 3461840
End: 3462370
Strand: Direct
Name: 119776044
Synonym: Sama_2912
Alternate gene names: NA
Gene position: 3461840-3462370 (Clockwise)
Preceding gene: 119776041
Following gene: 119776045
Centisome position: 80.39
GC content: 59.89
Gene sequence:
>531_bases ATGCAGGCACAAGATGCTGAATTACAAGGGCTCTTGTTACCCCGGGATCGCTGGACTCCCTTCGAAGCCGCCGTGCTCAT CCCGGCCGATCCCCGCTATGCCACCCTGCTGATGGTCACCACGGCCATGATATTTTTATTAATATTCCTGCCTCTGTCAT TGCTGCTTATCTTTGCCGGAGTGCCCGACATGATAGTGCTGGCGATCAGCAGCATTGGCGTATCGCTGGCAGGCCTCAGC CTGTGGCTGGGTCATCGCTGGGCCAATGCTCTGGGGTACGGCGTTGGCGAGCTGGACCTGCTCAGCCAAACCGGCGTGTG GTGGCAAAAGCGAACCGCCATGCCTTACAGCCGTATCCAGCACGTCACCCTGTCACAGGGACCCTTGGAGCGGCGCTACG GCCTCGCCTGCGTCAAGTGTTTCAGCGCTGGCAGCGGAAACGCTGAAATTGAAATTCGTGGCCTGCCCATCGACGATGCG GAGGCGCTGCGGGGCCACCTGCTCGCCCGTGCTGGAGTAACTGAACTGTGA
Upstream 100 bases:
>100_bases TGAGACGGCTTTGCAAGCAAATATTTCCATTGGCTGGATCCTCGCAACTTTTCACTGCTATATTGGCCGTGAATACAAAA ATGTCACAAGGACGACACAA
Downstream 100 bases:
>100_bases GTGCTACTGCCGAGAACTGGCAAAGCCTGTCGCCCTGGTCTGTAGTCAGCTTTACCCTGGGCACGGCGCGCCAGGTACTG ACCCAGGGCTATGCCCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Flanked Domain Protein
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA EALRGHLLARAGVTEL
Sequences:
>Translated_176_residues MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA EALRGHLLARAGVTEL >Mature_176_residues MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAGVPDMIVLAISSIGVSLAGLS LWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQHVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDA EALRGHLLARAGVTEL
Specific function: Unknown
COG id: COG3402
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19182; Mature: 19182
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAG CCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC VPDMIVLAISSIGVSLAGLSLWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQ CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCHHHHE HVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDAEALRGHLLARAGVTEL EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MQAQDAELQGLLLPRDRWTPFEAAVLIPADPRYATLLMVTTAMIFLLIFLPLSLLLIFAG CCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC VPDMIVLAISSIGVSLAGLSLWLGHRWANALGYGVGELDLLSQTGVWWQKRTAMPYSRIQ CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHCCCCCHHHHE HVTLSQGPLERRYGLACVKCFSAGSGNAEIEIRGLPIDDAEALRGHLLARAGVTEL EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA