| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776046
Identifier: 119776046
GI number: 119776046
Start: 3463857
End: 3464399
Strand: Direct
Name: 119776046
Synonym: Sama_2914
Alternate gene names: NA
Gene position: 3463857-3464399 (Clockwise)
Preceding gene: 119776045
Following gene: 119776047
Centisome position: 80.44
GC content: 52.85
Gene sequence:
>543_bases ATGACGCATTGGCAGCAAATCATCGATTTTTGGTTCAGCGAAATCAGCCCCAAACAATGGTGGCAAAAGGATGCTGACTT TGACCATCTGATTGCACAACGCTTTATCGAGGTGTTGGTCGCGGCCAAACGGGGGGAGCTCTTTGGCTGGCGGCAACACC CGATGGGACGCCTTGCGGAGATTATCGTGCTCGATCAGTTTTCACGTAATGTGTACCGCGATACCCCGGCTGCCTTTGAA GCCGACCCCATGGCATTGGTGCTGGCTCAGGAGGCCGTCGCTCTGGGAGTGGATAAGGCGCTGCCGGATAATATGGTGCC CTTTTTATACATGCCCTACATGCACAGCGAGTCGGCCCTTATCCACGAAGAAGCCATGAAACTCTTTTCCCGCGAGGCCG CCCGGGGCAACCTGGAGTTTGAGATTCGCCACAAGGCCATTATTGACCGATTTGGCCGTTATCCTCATAGAAACAATATA TTAGGCCGAGAGTCCAGCGCAGATGAACTCGCTTTTTTACAAGAACCCGGTTCCTCATTCTAA
Upstream 100 bases:
>100_bases TCCTGCCCTGGATCCCCTACAGCGAGGCCAGGACCATTGCTCTGGCCGCACTGACACAGCTGGACAAGCACAGAGGTAAC TGGATTTAACCGGAGCACAA
Downstream 100 bases:
>100_bases ATATTTGTTCCACCCGCTATTGCACAGGGAGTGAACTAAACTCAATACTGACTCGACAACCCAAGACGGCCCGCCGACAG AGCGACTAAACAATAAAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MTHWQQIIDFWFSEISPKQWWQKDADFDHLIAQRFIEVLVAAKRGELFGWRQHPMGRLAEIIVLDQFSRNVYRDTPAAFE ADPMALVLAQEAVALGVDKALPDNMVPFLYMPYMHSESALIHEEAMKLFSREAARGNLEFEIRHKAIIDRFGRYPHRNNI LGRESSADELAFLQEPGSSF
Sequences:
>Translated_180_residues MTHWQQIIDFWFSEISPKQWWQKDADFDHLIAQRFIEVLVAAKRGELFGWRQHPMGRLAEIIVLDQFSRNVYRDTPAAFE ADPMALVLAQEAVALGVDKALPDNMVPFLYMPYMHSESALIHEEAMKLFSREAARGNLEFEIRHKAIIDRFGRYPHRNNI LGRESSADELAFLQEPGSSF >Mature_179_residues THWQQIIDFWFSEISPKQWWQKDADFDHLIAQRFIEVLVAAKRGELFGWRQHPMGRLAEIIVLDQFSRNVYRDTPAAFEA DPMALVLAQEAVALGVDKALPDNMVPFLYMPYMHSESALIHEEAMKLFSREAARGNLEFEIRHKAIIDRFGRYPHRNNIL GRESSADELAFLQEPGSSF
Specific function: Unknown
COG id: COG3803
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20906; Mature: 20775
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS00414 PROFILIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHWQQIIDFWFSEISPKQWWQKDADFDHLIAQRFIEVLVAAKRGELFGWRQHPMGRLAE CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHH IIVLDQFSRNVYRDTPAAFEADPMALVLAQEAVALGVDKALPDNMVPFLYMPYMHSESAL HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHH IHEEAMKLFSREAARGNLEFEIRHKAIIDRFGRYPHRNNILGRESSADELAFLQEPGSSF HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure THWQQIIDFWFSEISPKQWWQKDADFDHLIAQRFIEVLVAAKRGELFGWRQHPMGRLAE CHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHH IIVLDQFSRNVYRDTPAAFEADPMALVLAQEAVALGVDKALPDNMVPFLYMPYMHSESAL HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHH IHEEAMKLFSREAARGNLEFEIRHKAIIDRFGRYPHRNNILGRESSADELAFLQEPGSSF HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA