| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is srmB [H]
Identifier: 119775874
GI number: 119775874
Start: 3276377
End: 3278218
Strand: Direct
Name: srmB [H]
Synonym: Sama_2742
Alternate gene names: 119775874
Gene position: 3276377-3278218 (Clockwise)
Preceding gene: 119775873
Following gene: 119775875
Centisome position: 76.09
GC content: 58.25
Gene sequence:
>1842_bases ATGCTATTTGAAGATTTCCAATTGGACCCCGAGCTGCTGGAGTCCCTGAAAGCCATGGGGCACAACACCCCCACCACCAT TCAGCGTATGACCATCCCCCTTGCCATGGAGCAAAGGGATATTCTGGCGCGCGCTCCAACAGGGACTGGCAAGACTGCCA GCTTTTTGCTGCCTGCGTTGCAGCATCTGATAGATTTCCCCCGCCGTCGTCCGGGTCAACCCCGGGTGCTGGTATTAACC CCAACCCGTGAGCTGGCAAGCCAAATCCATCGCTACGCCAGCCATTTGGCCACCAATCTGGAATTGGACATCAAGCTGAT CACCGGTGGTGTGCCCTATGGCCCACAGGAAGAGATGCTCAAGAGTAACGTCGATATCCTGGTGGCAACCCCGGGTCGCC TGTTGGAGTACCTGGACAAGGGCCATTTCAGCGCCGAACTGGTGGAAGTACTGGTTATCGATGAAGCCGACCGCATGTTG GATATGGGCTTTGGCGAAGTGGTGAAAACCATCGCCGTGGAAGCCAGTGGCCGTAAGCAGGCCATGCTGTTTTCCGCCAC TCTGGAAGGTGGCGGCGTGGGCAGCTTTGCCCGCGAGCTCCTGAACGAACCCATGTTTGTTGAGTCTGAGCCGCCCCGCA GTGAAAAAGCCAAAATCCATCAGTGGATACATCTGGCCGACGACAAAGACCACAAGTTTGCCCTGCTGACCCATCTGCTC AAGCAGGAAGAAGTCAAGCGGGCCATTGTTTTCTGTAAAACCCGTGACGTTGTGGCGTCGCTGGAAGGCCAGCTGCAACA GGCAGGTATTGCCTGCGCCTTTATGCGCGGCGACATGGATCAGAAAAAACGTTTCCAGGCACTGGGTCGCTTTACCAAGG GTGAAGTGAACGTGCTGCTGGCCACCGACGTGGCTGCACGGGGTATCGACATTGAAGACATCACCCATGTCATCAACTTC GATATGCCACGCTCCGCCGATACCTATGTGCACCGCATTGGCCGTACCGGCCGTGCAGGTGCCAAGGGCACCGCCATTTC TTTGGTGGAAGCCCACGACATGCGCATTCTGGGCAAGGTCGAGCGTTATATTGAGCAGCCGCTCAAGCGCAGGGTGATTG AAGAGCTGCGCCCCAAGCACAAGGAAGCCAAGGTGCCCACCAAGAAAAAGGTCAAGGCCAAGGATGCCAAAGCCAAGGCC AAAAATGCCAAGCCCAAGGCAGCCCCCGGCCGTGGTCCGGCTACACCCAACGCCAAGACCGCAGACAGCAGGGGCGGCGA CAACGTCCGTTCTGGCGGCAGAGCGTCGACGCGCCGCACTGGCACTGATGAGAAGGGCGACGGTCTGGACAAACACGAGC GCCGAGGCCATGACAAGCAGGAACGCAGAAGTCACGATAAGGGCGATACGGGCCGCAGCCAACATGGCGCACGTGAGCGT ACTGAAGGCCAGAGTTATGCCTCCAGAGACGGCAATCCCCGTGGCGCCAAGCGCGAAGTCGGTGAAAAAACGCCCCATAG CCGTAGCGACAAGCGTCACCAGGATACTGACCGTCAAAGCGCCAGAGGTTATCAATCGACCGAGCGCAGCCCAGCCCAGG GCAAAGCGCGCAGTGGCTCGCAGAGCAGCGATCGCGCCAATGCTGAAGGAAAACCACGTTATAACGCCCAGGGCAGTGAG CGTAACGGCTCCAAGAGCAGCGATCGCGCCAATGCTGAAGGAAAACAGCGTTATAACGCCCAGGGCAAGGACGGTAAACG CAGTGAGAAAAGCGGCGACTACCGCTCGTCTGCTCCCAAAGGTAGCGGCGGCAAAAGCCGCAAACCCTCAAAAGCGGATT AA
Upstream 100 bases:
>100_bases CGGCCCTGACCAGGGACTTTTACCTGAAACTGTAACTCCTGGTTTCAGTAACCGATTAAAGCACCTATAATACCGCGCCT GTTAGAGTAGGAATGCCACC
Downstream 100 bases:
>100_bases CAGCACAAAATGCGGATAAAAACAGGGGCCTGGTGCCCCTGTTTTATTTTGGCGCCGAAAAGCCAAACGCCCTGCCCACA AAGGTAGCCCCGATTAGACC
Product: ATP-dependent RNA helicase SrmB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPGQPRVLVLT PTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRML DMGFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINF DMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKA KNAKPKAAPGRGPATPNAKTADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGSQSSDRANAEGKPRYNAQGSE RNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPKGSGGKSRKPSKAD
Sequences:
>Translated_613_residues MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPGQPRVLVLT PTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRML DMGFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINF DMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKA KNAKPKAAPGRGPATPNAKTADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGSQSSDRANAEGKPRYNAQGSE RNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPKGSGGKSRKPSKAD >Mature_613_residues MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPGQPRVLVLT PTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRML DMGFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINF DMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKA KNAKPKAAPGRGPATPNAKTADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGSQSSDRANAEGKPRYNAQGSE RNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPKGSGGKSRKPSKAD
Specific function: RNA-dependent ATPase activity. Probably interacts with 23S ribosomal RNA [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI224593278, Length=375, Percent_Identity=38.9333333333333, Blast_Score=247, Evalue=3e-65, Organism=Homo sapiens, GI45446747, Length=365, Percent_Identity=35.8904109589041, Blast_Score=235, Evalue=8e-62, Organism=Homo sapiens, GI45446743, Length=365, Percent_Identity=35.8904109589041, Blast_Score=235, Evalue=8e-62, Organism=Homo sapiens, GI301171467, Length=372, Percent_Identity=36.5591397849462, Blast_Score=229, Evalue=8e-60, Organism=Homo sapiens, GI87196351, Length=372, Percent_Identity=36.5591397849462, Blast_Score=228, Evalue=2e-59, Organism=Homo sapiens, GI301171475, Length=372, Percent_Identity=36.5591397849462, Blast_Score=227, Evalue=3e-59, Organism=Homo sapiens, GI169881239, Length=372, Percent_Identity=36.8279569892473, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI13514809, Length=372, Percent_Identity=36.8279569892473, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI222352149, Length=381, Percent_Identity=36.4829396325459, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI148613856, Length=350, Percent_Identity=36, Blast_Score=219, Evalue=6e-57, Organism=Homo sapiens, GI38201710, Length=350, Percent_Identity=36, Blast_Score=219, Evalue=6e-57, Organism=Homo sapiens, GI13518015, Length=387, Percent_Identity=35.1421188630491, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI216548263, Length=383, Percent_Identity=35.509138381201, Blast_Score=215, Evalue=1e-55, Organism=Homo sapiens, GI262231852, Length=387, Percent_Identity=35.1421188630491, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI4758138, Length=359, Percent_Identity=34.2618384401114, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI262118318, Length=383, Percent_Identity=35.509138381201, Blast_Score=212, Evalue=1e-54, Organism=Homo sapiens, GI164419743, Length=370, Percent_Identity=35.1351351351351, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI51094101, Length=370, Percent_Identity=35.1351351351351, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI20149629, Length=368, Percent_Identity=35.8695652173913, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI31542656, Length=386, Percent_Identity=36.2694300518135, Blast_Score=207, Evalue=3e-53, Organism=Homo sapiens, GI41327771, Length=398, Percent_Identity=32.1608040201005, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI164664518, Length=360, Percent_Identity=32.7777777777778, Blast_Score=203, Evalue=4e-52, Organism=Homo sapiens, GI21071032, Length=366, Percent_Identity=33.879781420765, Blast_Score=202, Evalue=1e-51, Organism=Homo sapiens, GI13514831, Length=353, Percent_Identity=34.2776203966006, Blast_Score=201, Evalue=2e-51, Organism=Homo sapiens, GI188035877, Length=371, Percent_Identity=35.5795148247978, Blast_Score=200, Evalue=4e-51, Organism=Homo sapiens, GI6005743, Length=383, Percent_Identity=32.8981723237598, Blast_Score=197, Evalue=3e-50, Organism=Homo sapiens, GI7661920, Length=361, Percent_Identity=32.409972299169, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI8922886, Length=383, Percent_Identity=32.8981723237598, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI41327773, Length=358, Percent_Identity=34.0782122905028, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI55749865, Length=367, Percent_Identity=32.6975476839237, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI21040371, Length=370, Percent_Identity=35.1351351351351, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI50659095, Length=390, Percent_Identity=33.5897435897436, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI38327634, Length=411, Percent_Identity=32.8467153284672, Blast_Score=183, Evalue=5e-46, Organism=Homo sapiens, GI62241022, Length=367, Percent_Identity=32.425068119891, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI4758112, Length=369, Percent_Identity=33.3333333333333, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI18375623, Length=369, Percent_Identity=33.3333333333333, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI41327776, Length=368, Percent_Identity=33.1521739130435, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI9506931, Length=402, Percent_Identity=31.0945273631841, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI38569505, Length=375, Percent_Identity=31.4666666666667, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI164419732, Length=379, Percent_Identity=30.3430079155673, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI38569503, Length=375, Percent_Identity=31.4666666666667, Blast_Score=172, Evalue=1e-42, Organism=Homo sapiens, GI13129006, Length=392, Percent_Identity=31.6326530612245, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI83700235, Length=363, Percent_Identity=32.7823691460055, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI62241024, Length=345, Percent_Identity=32.1739130434783, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI4503529, Length=363, Percent_Identity=32.2314049586777, Blast_Score=169, Evalue=8e-42, Organism=Homo sapiens, GI41327779, Length=370, Percent_Identity=34.0540540540541, Blast_Score=169, Evalue=1e-41, Organism=Homo sapiens, GI17505907, Length=404, Percent_Identity=30.4455445544554, Blast_Score=168, Evalue=2e-41, Organism=Homo sapiens, GI256223453, Length=372, Percent_Identity=28.7634408602151, Blast_Score=159, Evalue=9e-39, Organism=Homo sapiens, GI9966805, Length=332, Percent_Identity=31.9277108433735, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI4826686, Length=337, Percent_Identity=32.0474777448071, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI256773275, Length=406, Percent_Identity=32.0197044334975, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI154759257, Length=460, Percent_Identity=26.7391304347826, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI20336298, Length=357, Percent_Identity=28.8515406162465, Blast_Score=115, Evalue=2e-25, Organism=Escherichia coli, GI1788930, Length=376, Percent_Identity=57.1808510638298, Blast_Score=421, Evalue=1e-119, Organism=Escherichia coli, GI1787016, Length=380, Percent_Identity=40, Blast_Score=275, Evalue=7e-75, Organism=Escherichia coli, GI1790214, Length=367, Percent_Identity=40.0544959128065, Blast_Score=260, Evalue=2e-70, Organism=Escherichia coli, GI87082221, Length=363, Percent_Identity=38.2920110192837, Blast_Score=230, Evalue=2e-61, Organism=Escherichia coli, GI1787605, Length=348, Percent_Identity=38.2183908045977, Blast_Score=206, Evalue=3e-54, Organism=Escherichia coli, GI48994977, Length=169, Percent_Identity=24.8520710059172, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533224, Length=360, Percent_Identity=38.6111111111111, Blast_Score=231, Evalue=6e-61, Organism=Caenorhabditis elegans, GI17552642, Length=366, Percent_Identity=36.0655737704918, Blast_Score=230, Evalue=2e-60, Organism=Caenorhabditis elegans, GI71999644, Length=368, Percent_Identity=36.1413043478261, Blast_Score=225, Evalue=5e-59, Organism=Caenorhabditis elegans, GI17510559, Length=400, Percent_Identity=34.25, Blast_Score=224, Evalue=9e-59, Organism=Caenorhabditis elegans, GI71999646, Length=368, Percent_Identity=36.1413043478261, Blast_Score=223, Evalue=3e-58, Organism=Caenorhabditis elegans, GI17507945, Length=374, Percent_Identity=35.5614973262032, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17510307, Length=364, Percent_Identity=34.8901098901099, Blast_Score=211, Evalue=1e-54, Organism=Caenorhabditis elegans, GI17510309, Length=364, Percent_Identity=34.8901098901099, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI71995514, Length=364, Percent_Identity=34.8901098901099, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI71995724, Length=361, Percent_Identity=34.0720221606648, Blast_Score=208, Evalue=6e-54, Organism=Caenorhabditis elegans, GI17555296, Length=435, Percent_Identity=33.1034482758621, Blast_Score=208, Evalue=7e-54, Organism=Caenorhabditis elegans, GI17507121, Length=361, Percent_Identity=33.7950138504155, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI17552114, Length=370, Percent_Identity=33.5135135135135, Blast_Score=205, Evalue=7e-53, Organism=Caenorhabditis elegans, GI17507881, Length=386, Percent_Identity=34.4559585492228, Blast_Score=203, Evalue=3e-52, Organism=Caenorhabditis elegans, GI86570094, Length=364, Percent_Identity=34.8901098901099, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI17509811, Length=402, Percent_Identity=33.3333333333333, Blast_Score=202, Evalue=6e-52, Organism=Caenorhabditis elegans, GI71987143, Length=363, Percent_Identity=32.7823691460055, Blast_Score=200, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17507879, Length=384, Percent_Identity=34.375, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI71995718, Length=373, Percent_Identity=34.3163538873995, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI17507877, Length=380, Percent_Identity=33.9473684210526, Blast_Score=198, Evalue=9e-51, Organism=Caenorhabditis elegans, GI32565321, Length=389, Percent_Identity=31.1053984575836, Blast_Score=196, Evalue=4e-50, Organism=Caenorhabditis elegans, GI17537549, Length=386, Percent_Identity=33.419689119171, Blast_Score=186, Evalue=3e-47, Organism=Caenorhabditis elegans, GI193208216, Length=426, Percent_Identity=30.0469483568075, Blast_Score=184, Evalue=2e-46, Organism=Caenorhabditis elegans, GI71990816, Length=409, Percent_Identity=32.2738386308068, Blast_Score=178, Evalue=8e-45, Organism=Caenorhabditis elegans, GI115532548, Length=420, Percent_Identity=31.9047619047619, Blast_Score=177, Evalue=1e-44, Organism=Caenorhabditis elegans, GI17536103, Length=398, Percent_Identity=31.6582914572864, Blast_Score=174, Evalue=2e-43, Organism=Caenorhabditis elegans, GI17507641, Length=396, Percent_Identity=33.0808080808081, Blast_Score=172, Evalue=6e-43, Organism=Caenorhabditis elegans, GI17505370, Length=346, Percent_Identity=33.2369942196532, Blast_Score=171, Evalue=8e-43, Organism=Caenorhabditis elegans, GI25148203, Length=451, Percent_Identity=27.0509977827051, Blast_Score=171, Evalue=1e-42, Organism=Caenorhabditis elegans, GI17536101, Length=398, Percent_Identity=31.6582914572864, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17536099, Length=398, Percent_Identity=31.6582914572864, Blast_Score=169, Evalue=5e-42, Organism=Caenorhabditis elegans, GI115532546, Length=378, Percent_Identity=31.7460317460317, Blast_Score=168, Evalue=7e-42, Organism=Caenorhabditis elegans, GI17508543, Length=380, Percent_Identity=30.7894736842105, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI71982858, Length=367, Percent_Identity=30.5177111716621, Blast_Score=164, Evalue=1e-40, Organism=Caenorhabditis elegans, GI32564046, Length=374, Percent_Identity=33.1550802139037, Blast_Score=155, Evalue=5e-38, Organism=Caenorhabditis elegans, GI17556951, Length=402, Percent_Identity=28.8557213930348, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI193206561, Length=348, Percent_Identity=28.1609195402299, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI25148291, Length=333, Percent_Identity=29.4294294294294, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI25148205, Length=378, Percent_Identity=24.8677248677249, Blast_Score=122, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17557982, Length=394, Percent_Identity=24.6192893401015, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17553716, Length=357, Percent_Identity=26.6106442577031, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71997889, Length=382, Percent_Identity=24.6073298429319, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71982862, Length=191, Percent_Identity=34.0314136125654, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17566630, Length=339, Percent_Identity=24.188790560472, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71987152, Length=97, Percent_Identity=44.3298969072165, Blast_Score=91, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6325138, Length=365, Percent_Identity=38.0821917808219, Blast_Score=233, Evalue=8e-62, Organism=Saccharomyces cerevisiae, GI6323021, Length=353, Percent_Identity=36.5439093484419, Blast_Score=229, Evalue=8e-61, Organism=Saccharomyces cerevisiae, GI6324217, Length=351, Percent_Identity=38.1766381766382, Blast_Score=226, Evalue=7e-60, Organism=Saccharomyces cerevisiae, GI6324778, Length=366, Percent_Identity=36.0655737704918, Blast_Score=222, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6321360, Length=343, Percent_Identity=38.1924198250729, Blast_Score=209, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6320041, Length=362, Percent_Identity=34.2541436464088, Blast_Score=204, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6320224, Length=364, Percent_Identity=32.967032967033, Blast_Score=204, Evalue=3e-53, Organism=Saccharomyces cerevisiae, GI6321856, Length=375, Percent_Identity=33.0666666666667, Blast_Score=201, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6323947, Length=355, Percent_Identity=36.6197183098592, Blast_Score=193, Evalue=6e-50, Organism=Saccharomyces cerevisiae, GI6320449, Length=399, Percent_Identity=31.5789473684211, Blast_Score=192, Evalue=1e-49, Organism=Saccharomyces cerevisiae, GI6320119, Length=377, Percent_Identity=34.7480106100796, Blast_Score=177, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6322427, Length=363, Percent_Identity=31.6804407713499, Blast_Score=176, Evalue=9e-45, Organism=Saccharomyces cerevisiae, GI6324620, Length=374, Percent_Identity=31.5508021390374, Blast_Score=176, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6322912, Length=361, Percent_Identity=32.409972299169, Blast_Score=176, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6322323, Length=361, Percent_Identity=32.409972299169, Blast_Score=176, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6319618, Length=406, Percent_Identity=29.3103448275862, Blast_Score=168, Evalue=2e-42, Organism=Saccharomyces cerevisiae, GI6321963, Length=384, Percent_Identity=33.3333333333333, Blast_Score=164, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6319714, Length=395, Percent_Identity=30.6329113924051, Blast_Score=162, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6321111, Length=369, Percent_Identity=30.6233062330623, Blast_Score=161, Evalue=4e-40, Organism=Saccharomyces cerevisiae, GI6320400, Length=389, Percent_Identity=30.5912596401028, Blast_Score=159, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6321267, Length=365, Percent_Identity=32.0547945205479, Blast_Score=150, Evalue=6e-37, Organism=Saccharomyces cerevisiae, GI6320173, Length=207, Percent_Identity=38.1642512077295, Blast_Score=135, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6323306, Length=315, Percent_Identity=29.2063492063492, Blast_Score=127, Evalue=6e-30, Organism=Saccharomyces cerevisiae, GI6324366, Length=354, Percent_Identity=28.5310734463277, Blast_Score=118, Evalue=3e-27, Organism=Saccharomyces cerevisiae, GI6322876, Length=456, Percent_Identity=26.0964912280702, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI21356161, Length=375, Percent_Identity=36.2666666666667, Blast_Score=244, Evalue=1e-64, Organism=Drosophila melanogaster, GI24662330, Length=365, Percent_Identity=35.0684931506849, Blast_Score=231, Evalue=9e-61, Organism=Drosophila melanogaster, GI24584399, Length=344, Percent_Identity=38.0813953488372, Blast_Score=225, Evalue=8e-59, Organism=Drosophila melanogaster, GI28574962, Length=354, Percent_Identity=37.5706214689266, Blast_Score=225, Evalue=9e-59, Organism=Drosophila melanogaster, GI28575014, Length=373, Percent_Identity=36.7292225201072, Blast_Score=219, Evalue=6e-57, Organism=Drosophila melanogaster, GI17985987, Length=379, Percent_Identity=34.8284960422164, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24644479, Length=359, Percent_Identity=34.5403899721448, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI21355075, Length=349, Percent_Identity=36.3896848137536, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24644483, Length=359, Percent_Identity=34.5403899721448, Blast_Score=214, Evalue=2e-55, Organism=Drosophila melanogaster, GI281361218, Length=359, Percent_Identity=34.5403899721448, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24644481, Length=359, Percent_Identity=34.5403899721448, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24644487, Length=357, Percent_Identity=34.733893557423, Blast_Score=213, Evalue=4e-55, Organism=Drosophila melanogaster, GI45551833, Length=357, Percent_Identity=34.733893557423, Blast_Score=213, Evalue=4e-55, Organism=Drosophila melanogaster, GI24644485, Length=357, Percent_Identity=34.733893557423, Blast_Score=213, Evalue=4e-55, Organism=Drosophila melanogaster, GI17977678, Length=357, Percent_Identity=35.0140056022409, Blast_Score=212, Evalue=8e-55, Organism=Drosophila melanogaster, GI24585582, Length=377, Percent_Identity=33.6870026525199, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI18857967, Length=359, Percent_Identity=35.6545961002786, Blast_Score=209, Evalue=5e-54, Organism=Drosophila melanogaster, GI24645031, Length=361, Percent_Identity=34.0720221606648, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24642151, Length=357, Percent_Identity=34.453781512605, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24583279, Length=360, Percent_Identity=33.6111111111111, Blast_Score=202, Evalue=5e-52, Organism=Drosophila melanogaster, GI24583281, Length=360, Percent_Identity=33.6111111111111, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI24584994, Length=373, Percent_Identity=31.9034852546917, Blast_Score=192, Evalue=4e-49, Organism=Drosophila melanogaster, GI17136814, Length=420, Percent_Identity=30.7142857142857, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI24582080, Length=361, Percent_Identity=32.1329639889197, Blast_Score=175, Evalue=1e-43, Organism=Drosophila melanogaster, GI24582078, Length=361, Percent_Identity=32.1329639889197, Blast_Score=175, Evalue=1e-43, Organism=Drosophila melanogaster, GI17136248, Length=361, Percent_Identity=32.1329639889197, Blast_Score=175, Evalue=1e-43, Organism=Drosophila melanogaster, GI24582075, Length=361, Percent_Identity=32.1329639889197, Blast_Score=175, Evalue=1e-43, Organism=Drosophila melanogaster, GI281365720, Length=312, Percent_Identity=35.8974358974359, Blast_Score=174, Evalue=2e-43, Organism=Drosophila melanogaster, GI24581954, Length=369, Percent_Identity=33.0623306233062, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24581952, Length=369, Percent_Identity=33.0623306233062, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24581956, Length=369, Percent_Identity=33.0623306233062, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24643725, Length=393, Percent_Identity=30.2798982188295, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI24642822, Length=396, Percent_Identity=29.040404040404, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI28571808, Length=363, Percent_Identity=31.6804407713499, Blast_Score=164, Evalue=2e-40, Organism=Drosophila melanogaster, GI28571809, Length=363, Percent_Identity=31.6804407713499, Blast_Score=164, Evalue=2e-40, Organism=Drosophila melanogaster, GI20130173, Length=445, Percent_Identity=31.2359550561798, Blast_Score=163, Evalue=3e-40, Organism=Drosophila melanogaster, GI17647335, Length=356, Percent_Identity=28.3707865168539, Blast_Score=162, Evalue=6e-40, Organism=Drosophila melanogaster, GI24666101, Length=415, Percent_Identity=29.6385542168675, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI19920478, Length=370, Percent_Identity=33.7837837837838, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI21355559, Length=384, Percent_Identity=32.2916666666667, Blast_Score=147, Evalue=2e-35, Organism=Drosophila melanogaster, GI24668515, Length=330, Percent_Identity=30.9090909090909, Blast_Score=145, Evalue=1e-34, Organism=Drosophila melanogaster, GI28571338, Length=453, Percent_Identity=27.3730684326711, Blast_Score=136, Evalue=4e-32, Organism=Drosophila melanogaster, GI18859659, Length=453, Percent_Identity=27.3730684326711, Blast_Score=136, Evalue=4e-32, Organism=Drosophila melanogaster, GI24640164, Length=349, Percent_Identity=26.0744985673352, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI17136666, Length=170, Percent_Identity=35.8823529411765, Blast_Score=92, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 67578; Mature: 67578
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL CCCCCCCCCHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHHHHCCCCCCCCHHHHHHHHH QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ HCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCE AMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL EEEEEEECCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHCCHHHHHHHHHHHCCCCCCEEEEE ATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKV EECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHH ERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKAKNAKPKAAPGRGPATPNAKT HHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC ADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHH TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGS HCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC QSSDRANAEGKPRYNAQGSERNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC GSGGKSRKPSKAD CCCCCCCCCCCCC >Mature Secondary Structure MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL CCCCCCCCCHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHHHHCCCCCCCCHHHHHHHHH QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ HCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCE AMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL EEEEEEECCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHCCHHHHHHHHHHHCCCCCCEEEEE ATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKV EECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHH ERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKAKNAKPKAAPGRGPATPNAKT HHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC ADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHH TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGS HCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC QSSDRANAEGKPRYNAQGSERNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC GSGGKSRKPSKAD CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]