Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yegM [C]

Identifier: 119775875

GI number: 119775875

Start: 3278415

End: 3279641

Strand: Direct

Name: yegM [C]

Synonym: Sama_2743

Alternate gene names: 119775875

Gene position: 3278415-3279641 (Clockwise)

Preceding gene: 119775874

Following gene: 119775876

Centisome position: 76.13

GC content: 57.05

Gene sequence:

>1227_bases
ATGGACAAGCGGGCCCCTATGAGCACTATGTTAAGACGTATCCTCCCCTTTATTATTCTCGCGCTGTTTATTCTGGCCGC
CATGGTACTCATGGCCACCAAAGAAGCCCCCGAGCAGAAAGCCGAAGAAGCCAATTTGCCAATTATTGAAGTGGCTGAGG
TGAAACAGGAAACGCTGTCTCTGAATCTGCCTTCTTACGGGGTGGTTATGCCAAGGCATAAAACACAGCTGGTGGCCGAA
GTGCAGGGGCGTCTGACAAGTGTATCCCCTAATTTTGTCGCTGGCGGTGTGGTGAAAGCCGGTGACCAACTGGCGGTGAT
TGAGCCGTCAGACTATCAGGCCGACCTGATGCAGGCCGAAGCTTCACTGGCACAGGCTACCGCCGCACTCAATGAGGAAA
TCGCCCGCGGGGAAGTGGCCAAAACCGAATTCAAGGGATATGACAAGGGTGTCCCCCCGGAACTGGGTTTGCGTATTCCA
CAGCTGAAAAAAGAACAGGCCAATGTGAAATATGCCGAAGCGGCACTGGCCCGCGCCAAGCGTAATCTGGAGCGCACCGT
TATCCGCGCGCCGTTTGACGGCATAGTCAAAGCCCGTGGTGTCGACCTGGGGCAATACGTCACCCTCGGCACCAAGCTGG
GTGAGCTATACGATACCAGTGTCGCCGAAATCCGCCTGCCACTGGCCAATGCCGACCTCGCCTATCTTGAGTCGGTAGAC
AACCCCGACACCGAAGTGACCCTGACAGCCTCCCTGGCCGGTCGCGAAGTGGTATGGACCGGTGACATAGTGCGCAGTGA
AGGGGTAATCGATGAAGGTAACCGCATGGTCTATCTGGTGGCGGAAATTCCAGACCCTTACCTGCGCAAGCATAAAACCC
AGGGCCAACTGCCGCTCAAGTACGGTACCTTCGTCAACGCCATCATCAAGGGCCGTACCGAGGACGGTATAGTGCGTCTG
GACCGCCATCTGGTGCGTGAGGGCAAGGTGCCGGTCGTTCGCAGCGACAACACCCTGGAGCTGCGCGACGTGAATGTTGT
GCGCTCGGATCTGAACTACGCCTACATCAAGGGCAGCCTCAAAACCGGAGAGCGCGTTTCCTTGACCAACACAGGCACCC
TGTCCACTGGTCAGATGGTGAAAATCCGCGGTGAAGAAACCCCAGACAGCACCAGAGACAGCGAGGCGCCCGCCGATGAG
CGTCTGGCACAGGCAGGGGATAAGTAA

Upstream 100 bases:

>100_bases
GACCTGGCCACCTCTTCGATAAAAATCAGATACATTTCTGTTACAAAAACTGATTGGTATAGCAAGGCGCTTTTGGTACC
TTAGGCCCCGTTACCTGTAT

Downstream 100 bases:

>100_bases
TGGACACCCACAAAGGTATAATTGCGTGGTTTGCCCGCAACAGTGTGGCGGCCAACCTGCTGATGATAGTGCTGCTGGTT
GGCGGCCTATTCAGCACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Membrane-Fusion Protein; HlyD Family Secretion Protein; Auxiliary Transport Protein MFP Family; RND Efflux Membrane Fusion Protein; Secretion Protein HlyD; Multidrug Resistance Protein; Secretion Protein; RND Efflux System Protein MFP Subunit; Acr Family Membrane-Fusion Protein; RND Efflux System Membrane Fusion Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; ATP Synthase F1 Subunit Beta; Putitive HlyD Family Secretion Protein; H+-Transporting Two-Sector ATPase Beta Subunit; Membrane-Fusion Protein-Like

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MDKRAPMSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLSLNLPSYGVVMPRHKTQLVAE
VQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAEASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIP
QLKKEQANVKYAEAALARAKRNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVD
NPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLKYGTFVNAIIKGRTEDGIVRL
DRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSLKTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADE
RLAQAGDK

Sequences:

>Translated_408_residues
MDKRAPMSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLSLNLPSYGVVMPRHKTQLVAE
VQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAEASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIP
QLKKEQANVKYAEAALARAKRNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVD
NPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLKYGTFVNAIIKGRTEDGIVRL
DRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSLKTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADE
RLAQAGDK
>Mature_408_residues
MDKRAPMSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLSLNLPSYGVVMPRHKTQLVAE
VQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAEASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIP
QLKKEQANVKYAEAALARAKRNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVD
NPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLKYGTFVNAIIKGRTEDGIVRL
DRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSLKTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADE
RLAQAGDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44602; Mature: 44602

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRAPMSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHHHHHHHHHE
LNLPSYGVVMPRHKTQLVAEVQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAE
ECCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEECCEEECCCEEEEECCCCCHHHHHHHH
ASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIPQLKKEQANVKYAEAALARAK
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCCCCCHHHHHCCCHHHHHHHHHHH
RNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVD
HHHHHHEEECCHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCC
NPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLK
CCCCEEEEEEECCCCEEEEECCCCCCCCCEECCCEEEEEEEECCCHHHHHCCCCCCCCCH
YGTFVNAIIKGRTEDGIVRLDRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSL
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEEEHHHHHHCCCEEEEECCC
KTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADERLAQAGDK
CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MDKRAPMSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHHHHHHHHHE
LNLPSYGVVMPRHKTQLVAEVQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAE
ECCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEECCEEECCCEEEEECCCCCHHHHHHHH
ASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIPQLKKEQANVKYAEAALARAK
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCCCCCHHHHHCCCHHHHHHHHHHH
RNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVD
HHHHHHEEECCHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCC
NPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLK
CCCCEEEEEEECCCCEEEEECCCCCCCCCEECCCEEEEEEEECCCHHHHHCCCCCCCCCH
YGTFVNAIIKGRTEDGIVRLDRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSL
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEEEHHHHHHCCCEEEEECCC
KTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADERLAQAGDK
CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA