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The map label for this gene is pecT [H]

Identifier: 119775794

GI number: 119775794

Start: 3186293

End: 3187216

Strand: Direct

Name: pecT [H]

Synonym: Sama_2662

Alternate gene names: 119775794

Gene position: 3186293-3187216 (Clockwise)

Preceding gene: 119775792

Following gene: 119775796

Centisome position: 73.99

GC content: 61.04

Gene sequence:

>924_bases
ATGTCATCCCCTTCCCTCGGCACTGAGCAGGTATTCCCCCAACAGGCCTTGCTGGATCCCGTGCTGCTGCGGGCCTTCGT
TGCGGTGGCCGACAGCGGCAGCTTTACCCGGGCCGCTGCCGCTACCCACTTAACCCAATCCACGGTCAGCCAGCAGCTAA
AGCGGCTCGAGCAGCAATTGGGCTGCGAGCTACTTAGCCGTAAGGGGCGCTATGCCATGCCAACCGCAGACGGAGAAAGG
CTTTTGGGTTATGCACGGCAAATTTTGGCCCTGATGGCCGAGGCCGGCATGACGCCCGCACAGCCGCCCCTACTGAGGCT
CGCTGTGGCAGAAGATTTTGCCGGAACCGCCCTGATGCCCATCCTGAAAAAGCTCATCACACGCTTTCCCAGCGTAAAGC
TCGAGGTGCAATCGGGCCTCAGTAAACCGCTTTATCAGGCATTTCAGGAAGGTGTGGTGGAATTGGCACTCATTAAACAG
CGTCAGGGAGAGCACCCGGCCAAAGCCTGCTGGCCAGAGGCGCTGAGCTGGCTTGCCGCCGCCGACTGGCAAGCTGTGAA
AGCGGGAGAGCCAGTGCCCCTGATTGCTTTTCCGGCAGGGGGCCTGTATCGCAACGAAATGGCTCAGCTGCTGGACGAAG
CCGGGATCCCCTGGCGACTGGTATATAGCAGCAATTCCCTCGAGGGCGTGCTGTGCGCCGTGGCCGCCGGGATGGGTGTC
AGTTTGTTACCCAGCCGCTTTATCAGGGCCAGGGAGCATAGAGAGATAACAGCGCTGCCACGGGCAACCGCTATGGAGCT
GGCGCTGCATCTTGCCAGTTCTCCCGGGGCTGAACTGCAGTGGCTGGCGGATGAAATAGGCGCTTATTGCGACCGGCTCT
CCAGCGGCGGCTCGTCAGTGTCGTGCCCCAACACATCGGCATAA

Upstream 100 bases:

>100_bases
GTGAGTCTTGTTATTGTGCCCCCAGTCTAGGATGCGGCAATTTGATTTAGAAATTAAATAACGAAATAATCATCAGTGGA
TTTCCCACTGGAATATAACT

Downstream 100 bases:

>100_bases
ATAGCACACACCCGCTCACTGTGCTCGGCAACGGCGATTGCCGGCAACTGCCCAGCCTCACGTTGCAGGGTCAGCCTGTG
GTTTTCATCCCGCAAGGTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSSPSLGTEQVFPQQALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQLGCELLSRKGRYAMPTADGER
LLGYARQILALMAEAGMTPAQPPLLRLAVAEDFAGTALMPILKKLITRFPSVKLEVQSGLSKPLYQAFQEGVVELALIKQ
RQGEHPAKACWPEALSWLAAADWQAVKAGEPVPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGV
SLLPSRFIRAREHREITALPRATAMELALHLASSPGAELQWLADEIGAYCDRLSSGGSSVSCPNTSA

Sequences:

>Translated_307_residues
MSSPSLGTEQVFPQQALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQLGCELLSRKGRYAMPTADGER
LLGYARQILALMAEAGMTPAQPPLLRLAVAEDFAGTALMPILKKLITRFPSVKLEVQSGLSKPLYQAFQEGVVELALIKQ
RQGEHPAKACWPEALSWLAAADWQAVKAGEPVPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGV
SLLPSRFIRAREHREITALPRATAMELALHLASSPGAELQWLADEIGAYCDRLSSGGSSVSCPNTSA
>Mature_306_residues
SSPSLGTEQVFPQQALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQLGCELLSRKGRYAMPTADGERL
LGYARQILALMAEAGMTPAQPPLLRLAVAEDFAGTALMPILKKLITRFPSVKLEVQSGLSKPLYQAFQEGVVELALIKQR
QGEHPAKACWPEALSWLAAADWQAVKAGEPVPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGVS
LLPSRFIRAREHREITALPRATAMELALHLASSPGAELQWLADEIGAYCDRLSSGGSSVSCPNTSA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=230, Percent_Identity=36.5217391304348, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787806, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787589, Length=258, Percent_Identity=26.3565891472868, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=25.5725190839695, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=28.1632653061224, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=118, Percent_Identity=38.9830508474576, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787530, Length=241, Percent_Identity=23.6514522821577, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=25.8196721311475, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32876; Mature: 32745

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPSLGTEQVFPQQALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQL
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GCELLSRKGRYAMPTADGERLLGYARQILALMAEAGMTPAQPPLLRLAVAEDFAGTALMP
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
ILKKLITRFPSVKLEVQSGLSKPLYQAFQEGVVELALIKQRQGEHPAKACWPEALSWLAA
HHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ADWQAVKAGEPVPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGV
HCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCH
SLLPSRFIRAREHREITALPRATAMELALHLASSPGAELQWLADEIGAYCDRLSSGGSSV
HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
SCPNTSA
CCCCCCC
>Mature Secondary Structure 
SSPSLGTEQVFPQQALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQL
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GCELLSRKGRYAMPTADGERLLGYARQILALMAEAGMTPAQPPLLRLAVAEDFAGTALMP
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
ILKKLITRFPSVKLEVQSGLSKPLYQAFQEGVVELALIKQRQGEHPAKACWPEALSWLAA
HHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ADWQAVKAGEPVPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGV
HCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCH
SLLPSRFIRAREHREITALPRATAMELALHLASSPGAELQWLADEIGAYCDRLSSGGSSV
HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
SCPNTSA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]