| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775796
Identifier: 119775796
GI number: 119775796
Start: 3190258
End: 3191235
Strand: Direct
Name: 119775796
Synonym: Sama_2664
Alternate gene names: NA
Gene position: 3190258-3191235 (Clockwise)
Preceding gene: 119775794
Following gene: 119775797
Centisome position: 74.09
GC content: 58.08
Gene sequence:
>978_bases ATGGCAGGATGGCTAAAACGCATCTTTCTCCCGCTGGGAGCTGTGATGCTGATGCTTGGCCTGGCAGGCTGTGGCGACGA TGGCGCAGCCCAGCAGGCTAAAGAAATTGACAAATACCTCACGCTCACTGAGAGCCGTATCAATACGCTTGGAGGTATGC TGGATAAGGGGGAAATCCGCAATGCGACCCTGATTGCCCAGTATGCCGAGCGACTCAAGTCTCAGGATGCATCTTTATCT CCCATCATTGACGCCCTGTCCCAGGATGCCGCCCGGGGCCCTCTGTATCAGAGCCTGGTCAGACGCCGCAGTGACGCGCT TGCTCCGGTCAACTTTGTCGATGAAGACATGCGCCTTGCGGAGCTGGAAAATCTCTATCAGGCGGCCGACCCTATTCTGT ATAACGACATGCTGTCAGATCCCCTGAATGCGCTGGCCGACATGTCGAAAGGCACCCTGCCCCGCATGAATGCCATCAGC CGCGAAGCCGAGCTTGCCGCCAATGGCGAAGACTTCGGGCCGGGTAGTCAGCTCGTCGGCAACCCCACATACGGCCAGTG GCAAACCGGTAGCGATGGCACCTCGTTCTGGGCCTGGTATGGCATGTATGCCATGTTCTCCAACCTGTTCCACCGGCCAG TTTATTACGATACCTGGTCAGGCGGTCGTCACTACAGCTATTACAACGATGTGGGGCGCTACCGCTACAGCTCTCCAAGG GATTTGGCACGCCAGCAGCAGGTCTTTACCCAGGCGAAAAAGCGCTTTGATAGCCAGGGGAAGCGATTTGACAGCCCGTA CGCCAAAACCCGCAGCGGTGCCAGTGGGCTATCACGCCAAAGCCAACAGGCCCCCAGCGTGGCCCAGGCCGCCAAGGCCC GTACCGAAAAACAGAAATTCCGCTCCAACTATGCCAAGGACAGCAGTTTTCGCGATGCCAAAAACCGCACCAGCCGCAGC ACCCGACGTGGCAAGTGA
Upstream 100 bases:
>100_bases CTCTGGGGATGACCTATGGGTTAACCCGATAATATTCCCTGAATTTTTTAATGCACTGCCCAGGACTTTCCCCAGCGGTG CAGGGATTAACGGAGTGAAA
Downstream 100 bases:
>100_bases GCCCAGAAATTAAGGATCTGATGATGACACTGTTACAAGACTATGGCCTGACACAAGAACTGTTGCTGATCCTGGCCATC GACCTCACCATCGCCGTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MAGWLKRIFLPLGAVMLMLGLAGCGDDGAAQQAKEIDKYLTLTESRINTLGGMLDKGEIRNATLIAQYAERLKSQDASLS PIIDALSQDAARGPLYQSLVRRRSDALAPVNFVDEDMRLAELENLYQAADPILYNDMLSDPLNALADMSKGTLPRMNAIS REAELAANGEDFGPGSQLVGNPTYGQWQTGSDGTSFWAWYGMYAMFSNLFHRPVYYDTWSGGRHYSYYNDVGRYRYSSPR DLARQQQVFTQAKKRFDSQGKRFDSPYAKTRSGASGLSRQSQQAPSVAQAAKARTEKQKFRSNYAKDSSFRDAKNRTSRS TRRGK
Sequences:
>Translated_325_residues MAGWLKRIFLPLGAVMLMLGLAGCGDDGAAQQAKEIDKYLTLTESRINTLGGMLDKGEIRNATLIAQYAERLKSQDASLS PIIDALSQDAARGPLYQSLVRRRSDALAPVNFVDEDMRLAELENLYQAADPILYNDMLSDPLNALADMSKGTLPRMNAIS REAELAANGEDFGPGSQLVGNPTYGQWQTGSDGTSFWAWYGMYAMFSNLFHRPVYYDTWSGGRHYSYYNDVGRYRYSSPR DLARQQQVFTQAKKRFDSQGKRFDSPYAKTRSGASGLSRQSQQAPSVAQAAKARTEKQKFRSNYAKDSSFRDAKNRTSRS TRRGK >Mature_324_residues AGWLKRIFLPLGAVMLMLGLAGCGDDGAAQQAKEIDKYLTLTESRINTLGGMLDKGEIRNATLIAQYAERLKSQDASLSP IIDALSQDAARGPLYQSLVRRRSDALAPVNFVDEDMRLAELENLYQAADPILYNDMLSDPLNALADMSKGTLPRMNAISR EAELAANGEDFGPGSQLVGNPTYGQWQTGSDGTSFWAWYGMYAMFSNLFHRPVYYDTWSGGRHYSYYNDVGRYRYSSPRD LARQQQVFTQAKKRFDSQGKRFDSPYAKTRSGASGLSRQSQQAPSVAQAAKARTEKQKFRSNYAKDSSFRDAKNRTSRST RRGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36278; Mature: 36147
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGWLKRIFLPLGAVMLMLGLAGCGDDGAAQQAKEIDKYLTLTESRINTLGGMLDKGEIR CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHC NATLIAQYAERLKSQDASLSPIIDALSQDAARGPLYQSLVRRRSDALAPVNFVDEDMRLA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHH ELENLYQAADPILYNDMLSDPLNALADMSKGTLPRMNAISREAELAANGEDFGPGSQLVG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC NPTYGQWQTGSDGTSFWAWYGMYAMFSNLFHRPVYYDTWSGGRHYSYYNDVGRYRYSSPR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH DLARQQQVFTQAKKRFDSQGKRFDSPYAKTRSGASGLSRQSQQAPSVAQAAKARTEKQKF HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH RSNYAKDSSFRDAKNRTSRSTRRGK HHHHCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure AGWLKRIFLPLGAVMLMLGLAGCGDDGAAQQAKEIDKYLTLTESRINTLGGMLDKGEIR CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHC NATLIAQYAERLKSQDASLSPIIDALSQDAARGPLYQSLVRRRSDALAPVNFVDEDMRLA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHH ELENLYQAADPILYNDMLSDPLNALADMSKGTLPRMNAISREAELAANGEDFGPGSQLVG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC NPTYGQWQTGSDGTSFWAWYGMYAMFSNLFHRPVYYDTWSGGRHYSYYNDVGRYRYSSPR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH DLARQQQVFTQAKKRFDSQGKRFDSPYAKTRSGASGLSRQSQQAPSVAQAAKARTEKQKF HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH RSNYAKDSSFRDAKNRTSRSTRRGK HHHHCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA